WGS of S. Typhi
Sequencing library preparation was by Illumina Nextera XT DNA sample preparation kit (Illumina, USA). Genomic DNA samples were fragmented using Covaris M-series (M220) at temperature of 5.5 to 6C for 40seconds. DNA fragments were end repaired using dA bases before ligation with Illumina indexed adapters, amplified for 10 cycles of PCR and sequenced employing v2 and v3 chemistry with paired-end 2151bp reads on Illumina MiSeq (Illumina, USA).