WGS of Coxiella burnetii: goat bulk tank milk
C. burnetii was isolated from caprine bulk tank milk by in vivo isolation in OF1 mice (Charles Rivers, Wilmington, MA) and amplification in embryonated chicken eggs as previously described (Mori et al., 2017).  DNA was extracted and purified using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany)  according to manufacturer instructions. WGS was performed on Illumina MiSeq platform using standard protocols (Garcia-Graells et al., 2020).