Whole genome sequence of Halomonas smyrnensis BAE2
Illumina MiSeq PE250 system was used. Reads with phred scores less than 25 were trimmed out. Using bowtie2, trimmed reads were mapped backed to H. smyrnensis AAD6 genome (RefSeq: NZ_AJKS00000000.2). VarScan was used to predict the structural variants on sequenced genomes (default settings).