Stool covid : Cov_70
Fresh stool samples were resuspended at 100 g/mL, filtered for 30 m and subjected to the Illumina Nextera XT workflow using the primers 5-TCgTCggCAgCgTCAgATgTgTATAAgAgACAgCCTACgggNggCWgCAg-3 and 5-gTCTCgTgggCTCggAgATgTgTATAAgAgACAggACTACHVgggTATCTAATCC-3 for the first amplicon PCR. After Nextera v2 index PCR and quality control by capillary gel electrophoreses samples were pooled and sequenced on MiSeq device (Illumina).