MeX_Seq
Amplicons were amplified using 100 ng of plasmid. The amplification product was purified using an agarose gel. Single Index PentAdapters from Pentabase were used to prepare PCR-free libraries with the KAPA HyperPrep Kit (now Roche, Basel, CH) according to manufacturer's specifications. Libraries were quantified using the qPCR KAPA Library Quantification Kit. Libraries were pooled and sequenced PE 2x151 with an Illumina HiSeq 2500 using v4 SBS chemistry. Roughly 20% genomic PhiX library as spike-in to increase sequence diversity. Basecalling was done with bcl2fastq v2.20.0.422.