RNA-Seq of Drosophila melanogaster infected with C. subtsugae: gut and carcass
Samples were prepared for whole genome sequencing using an Illumina Stranded mRNA Prep with unique dual indexes. Sequencing was performed on the Illumina NextSeq2000 platform using a 300-cycle flow cell kit to produce 2x150bp paired reads. Read demultiplexing, read trimming, and run analytics were performed using DRAGEN (v3.10.12), an onboard analysis software on the NextSeq2000.