ChIP-Seq-mice liver macrophages-LPS stimulated
The ChIP-DNA was amplified to generate a library for sequencing. Sequencing was performed on Illumina HiSeq3000 (Illumina, San Diego, CA) for a single read 50 run at UCLA Technology Center for Genomics & Bioinformatics (TCGB). A data quality check was done on Illumina SAV. Demultiplexing was performed with the Illumina Bcl2fastq2 v 2.17 program. Reads were mapped to mouse mm10 genome using Bowtie1, and MACS2 was used for the peak calling. ChIPseeker was used for the peak annotation. Genome browser representation files were generated by converting ChIP-seq data to bigWig format.