GSM6774452: UM-SCC-47; Homo sapiens; OTHER
An HPV custom panel was created by designing 132 probes comprehensively against the HPV16 reference genome, and a backbone panel was created because of the need for read correction to compare between samples. We used 100 randomly selected locations from “xGen Human CNV Backbone Hyb panel probes” as backbone panel. We used these panels to perform hybridization captures and created DNA libraries. The hybridization capture was performed using the provided assay kit according to the manufacturer's protocol (Integrated DNA Technologies, Inc., Coralville, IA, USA).