Amplicon seq of SARS-CoV-2: nasopharyngeal swab
Libraries were prepared on an Agilent Bravo workstation using the CoronaHiT protoco with ARTIC v4.1 amplicon primers. Sequencing was performed aiming for a target depth of 5000X per genome on an Illumina sequencer using 2 x 75-bp paired-end reads. All runs included both positive and negative controls to detect contamination at each step of the protocol.