WGS of Enterobacter hormaechei
DNA was extracted from bacterium using Norgen bacterial DNA extraction kit. Genomic DNA was fragmented using an enzymatic approach (NEB Ultra II FS kit). Resulting DNA fragments were size selected (200  700bp), using AMPure XP beads, the fragments were end repaired and Illumina specific adapter sequences were ligated to each fragment. Each sample was individually indexed, and a second size selection step was performed. Samples were then quantified, using a fluorometric method, diluted to a standard concentration (4nM) and then sequenced on Illuminas NextSeq500 platform, using a NextSeq mid out kit (300 cycle), following a standard protocol as described by the manufacturer. 400 mb of data (2x150bp paired-end read) were produced for each sample.