GSM6833108: PDAC_Subq_tumor_GB1275; Mus musculus; RNA-Seq
PDAC tissues were taken from vehicle-treated, GB1275-treated KP2 Subq pancreatic tumors, 14 days post-treatment. Immune cells (CD45+) were sorted by an Aria-II cell sorter (BD Biosciences). Each sample was generated from a pool of three mice/treatment group and two total libraries were sequenced. Library was performed according to the manufacter's instructions (single cell 3' v2 protocol, 10x Genomics). Briefly, GCs were resuspended in the master mix and loaded together with partitioning oil and gel beads into the chip to generate the gel bead-in-emulsion (GEM). The poly-A RNA from the cell lysate contained in every single GEM was retrotranscripted to cDNA, which contains an Ilumina R1 primer sequence, Unique Molecular Identifier (UMI) and the 10x Barcode. The pooled barcoded cDNA was then cleaned up with Silane DynaBeads, amplified by PCR and the apropiated sized fragments were selected with SPRIselect reagent for subsequent library construction. During the library construction Ilumina R2 primer sequence, paired-end constructs with P5 and P7 sequences and a sample index were added.