Microbacterium oxydans strain DSM 20578
Library preparation was performed using an adapted protocol of the NEB (New England BioLabs) prep kit. Paired-end sequence reads (PE150) were generated using the NovaSeq 6000 platform (Illumina). Quality check, trimming of the raw sequence reads and de novo genome assembly were performed using the Shovill pipeline (https://github.com/tseemann/shovill), aiming at an average coverage of 100x. Contigs shorter than 500 bp were excluded from the final assembly. Quality check of the assemblies was performed using QUAST