Bubaline herpesvirus 1
The sequence data was processed fastp to remove adapter sequences and lowquality bases. The quality trimmed reads were checked for the presence of Bovine genome (Bosindicus ). All the reads which did not align with the Bovine genome were realigned with their respective reference genomes using BWA mem Algorithm and indexed usingsamtools.iVar  generates consensus sequences taking into account ambiguous nucleotides with a minimum base quality score of Q20 and a minimum base coverage 10 from theoutput of samtools mpileup.The coverage of consensus sequences were determined using samtools coverage option.The consensus sequences were further annotated using Prokka v1.14.6 with viruses option.HeiferVagina 1(contigue), 137649 (bases), 86 (CDS), 86 (gene).