Long-read metagenomic sequencing of rectal swab in Amies broth
Rectal swabs in Amies broth were prepared for sequencing using the 1D ligation kit (SQK-LSK108). Samples were barcoded and multiplexed on the Nanopore GridION X5. Long-read sequences were processed by minimap2 to remove human by comparison against CHM13v2.0.