SARS-CoV-2 genomic data: human-associated
Total RNA was extracted using QIAamp Viral RNA Mini kits (Qiagen), and cDNA synthesis was performed with random hexamers. The SARS-CoV-2 genome was amplified using COVIDSeq RUO kits (Illumina), as per the manufacturers instructions. The resulting amplicons were then used to build standard libraries that were sequenced on a NextSeq 500 instrument (Illumina) configured for 75 base-pair single-end sequencing.