ddRADseq of Dioon planifolium individual from San Juan Teita, Oaxaca
ddRADseq experiment of six populations of Dioon holmgrenii and one population of D. planifolium. Barcodes identify individuals within indexed pools. Library_ID gives sample name_barcode_index. Demultiplexed and filtered using Stacks process_radtags program with parameters: --barcode_dist_1 0 --retain_header --adapter_1 AGA TCG GAA GAG CAC ACG TCT GAA CTC CAG TCA --adapter_2 AGA TCG GAA GAG CGT CGT GTA GGG AAA GAG TGT --renz_1 dpnII --renz_2 mspI -D --adapter_mm 1 --inline_index -q -c -r. Files 1 and 2 contain forward and reverse read pairs, files 3 and 4 are unpaired forward and reverse reads resulting from process_radtags filters.