ddRADseq of Dioon holmgrenii individual from Juchatengo, Oaxaca
ddRADseq experiment of six populations of Dioon holmgrenii and one population of D. planifolium. Barcodes identify individuals within indexed pools. Library_ID gives sample name_barcode_index. Demultiplexed and filtered using Stacks process_radtags program with parameters: --barcode_dist_1 0 --retain_header --adapter_1 AGA TCG GAA GAG CAC ACG TCT GAA CTC CAG TCA --adapter_2 AGA TCG GAA GAG CGT CGT GTA GGG AAA GAG TGT --renz_1 dpnII --renz_2 mspI -D --adapter_mm 1 --inline_index -q -c -r. Files 1 and 2 contain forward and reverse read pairs, files 3 and 4 are unpaired forward and reverse reads resulting from process_radtags filters.