12558_CapC
Library type is targeted Chromatin Conformation Capture (Capture C). We performed 2X150nt paired-end sequencing at the Princeton University Lewis-Siglers Genomics core facility. All reads were aligned to the CanFam 3.1 reference genome using bwa mem v0.7.17, with the -SP5 flag, and sorted using samtools v1.9. Since libraries were PCR amplified, we removed duplicates (strands mapping to the same co-ordinates) using pairtools v0.3.0.