Libraries were prepared from 5 &mu;g of nucleocapsid purified genomic DNA that was fragmented by sonication to an average length of 200 bp. The samples were processed and indexed according to Illumina Library Creation kit&#39;s instructions, clustered on a cBot v1.4.36.0 using Illumina&#39;s TruSeq PE Cluster Kit v2.0 and sequenced on one flowcell lane using a 200-cycle TruSeq SBS HS v2 kit.