Shot read WGS of Pseudomonas aeruginosa clinical respiratory isolates with acquired resistance to a bacteriophage cocktail
For short-read sequencing, DNA samples were sent to two external laboratories (Australian Genome Research Facility, Melbourne, Australia and SA Pathology, Adelaide, Australia) for whole genome sequencing on the MiSeq and NextSeq platforms (Illumina) with 250 bp and 150 bp paired-end reads respectively to a depth of 100x estimated genome length