EGDe_LAC_8h Rep1
Ribo-Zero rRNA depletion and the generation of paired-end reads using a MiSeq system was done by BaseClear B.V. (Leiden, The Netherlands). Adapter trimming and quality-checking were done using Trim_Galore version 0.6.2, and read mapping against the  reference genome was performed using STAR aligner version 2.7.1 by BaseClear. Counting of reads was done by htseq-count (version 0.11.1). Differential expression analysis was performed using the DEseq2 package (version 1.24.0) in the statistical programming language R (version 3.6.0).