whole genome population sequencing of Staphylococcus aureus from mouse SSTI
DNA was extracted using the DNeasy blood and tissue kit (Qiagen). Extracted DNA was frozen and sent to SeqCoast Genomics (https://seqcoast.com) for 2x150bp paired end reads whole genome sequencing using an Illumina NextSeq2000 sequencing platform. Samples were prepped using the Illumina DNA Prep tagmentation kit and spiked with 1-2% PhiX control.