Amplicon sequencing of Aedes aegypti: kdr and COI
Four amplicons (989, 1016, 1534 knockdown resistance regions and cytochrome oxidase I region) were combined and sequenced on a MInION Mk1B using R10 chemistry and the SQK-NBD114.96  sequencing kit. After quality filtering, reads were mapped to NC_035109.1:315938900-315939599, NC_035109.1:315983000-315984499 and KY022526.1 using minimap2