lz1
The whole-genome sequencing of R. ruber lz1 was conducted by Shanghai Majorbio Bio-Pharm Technology Co., Ltd. (Shanghai, China). A genomic library was constructed using Covaris M220 for DNA fragmentation (Thermo, Waltham, USA). The fragmented DNA was ligated to complementary adapters at both ends, forming a "bridge" amplification structure for PCR, enabling subsequent polymerization and single-stranded DNA production. The Illumina HiSeq X Ten platform was used for bacterial genome sequencing. The raw sequencing data for each sample ensured a genome coverage depth of at least 100, followed by the final assembly of multiple genomic scaffolds. High-quality reads were filtered using SOAPdenovo (http://soap.genomics.org.cn/). The coding sequences (CDS) were predicted using Glimmer 3.02 software (http://ccb.jhu.edu/software/glimmer/index.shtml/).