whole genome sequence of ETEC: stool
ETEC isolate genomic DNA was extracted using the QIAamp DNA Mini Kit (QIAGEN, Hilden, Germany) following the manufacturer's instructions and established protocols with a 60l elution volume. DNA libraries featuring an average insert size of 350bp were prepared using the Illumina DNA preparation kit and Miseq reagent kit v3 according to manufacturers instructions for subsequent sequencing on the Illumina MiSeq platform.