Sequencing of Escherichia coli isolate 100117
Samples were pre-treated with lysozyme, and extracted using Qiagen's DNeasy Blood & Tissue kit. Nanopore samples were prepared for sequencing using Oxford Nanopores Genomic DNA by Ligation kit and protocol. All samples were run on Nanopore R9 flow cells. Guppy (4.4.2) was used to perform base calling.