GSM9285540: E2_ATAC_AP03; Gallus gallus; ATAC-seq
N.A. After enzymatic tissue dissociation cells were processed using the OMNI-ATAC-Seq protocol (Corces et al., 2017) Bam alignment files were indexed using samtools (version 1.10), followed by marking of duplicate reads using Picard's (version 2.26.2) MarkDuplicates function. Duplicate reads were then removed using samtools view with the following arguments: “-F 1804 -f 2”. Peaks were called with macs2 (version 2.2.7.1) using the parameters: “-f BAMPE -g 1e9 -q 0.05 --call-summits”