Metatranscriptome of Litopenaeus vannamei collected from S73_PL_S
Tissue samples were pooled by animal type (shrimp, tilapia, and red drum), culture system (monoculture and polyculture), and culture stage (Stage 0 to Stage 4). In total, 84 libraries were sequenced (31 shrimp, 6 tilapia, 6 red drum, and 41 water. For each library, adaptor sequences and low-quality bases were trimmed from the raw reads using fastp with the following parameters (SLIDINGWINDOW:4:5, LEADING:5, TRAILING:5, and MINLEN:25). Reads shorter than 100 bp were discarded, and the high-quality reads were remain.
SUB15899923
S2_YX_W_4