Whole genome sequencing of Listeria monocytogenes from Atlantic salmon value chain
Genomic DNA was extracted, libraries were constructed by Rapid Protocol (SQK-RBK114..24) and sequenced on R10.4.1 flowcell on the PromethION 2 Solo platform. Basecalling was done with Dorado v0.7.1. The raw reads were filtered using NanoFilt (v2.6.0) with a quality score threshold of 16 and a minimum length of 1000 bp, followed by assembly using Flye.