Wholde genome sequencing of Staphylococcus epidermidis
The software versions used during data acquisition were MinKNOW 24.11.10, Bream 8.2.5, Configuration 6.2.12, Dorado 7.6.8, MinKNOW Core 6.2.8. The fastq files were processed as follows: ONT adapters were removed with porechop 0.2.4. Then, read sequences with length <1000 bp were filtered out from the files using filtlong 0.2.1. Quality analysis of the resulting reads was done using NanoPlot 1.44.1. A genome assembly was performed using flye 2.9.5-b1801. Quality evaluation of the genome assemblies was performed with checkm 1.2.3.