Raw reads: HCV_Nigeria_run_12230630
Metagenomic whole-genome sequencing of Hepatitis C virus from plasma collected in Nigeria.
Amplicons were cleaned up with AMPure XP beads at a 1:1 ratio and quantified with Qubit. Libraries were prepared with Illumina Viral Surveillance Panel v2 or Twist Viral Capture protocol. Sequencing was performed on the Illumina NextSeq 2000 platform.