GSM9540929: CSC-A with no Curtobacterium/Timepoint2/Replicate3/Media=B4; Curtobacterium flaccumfaciens; Microbacterium foliorum; Bacillus toyonensis; Rhodococcus qingshengii; RNA-Seq
RNA extraction was performed using Zymo's Quick-DNA/RNA Miniprep Kit (D7003) and sequenced by Azenta (South Plainfield, NJ) using Illumina technology. Bioconductor's DESeq2 package (3.9)26 was used to analyze gene expression for each member of the CSC-A community under the different conditions tested (in the presence and absence of C. flaccumfaciens and R. qingshengii or in different media types). NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina