WGS of Campylobacter jejuni
Whole genome sequencing (WGS) was performed on 43 Campylobacter jejuni isolates collected across three farm rotations. DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen, Germany) following the manufacturer's protocol. Sequencing libraries were prepared with Illumina standard paired-end protocols and sequenced on an Illumina NovaSeq 6000 platform, generating 150 bp paired-end reads.