Illumina_paired_data_of_B.subtilis_and_prophages
Genomic DNA was prepared for sequencing using the NEBNext Ultra II FS DNA PCR-Free Library Prep Kit (New England Biolabs), following the manufacturer's protocol. Libraries were dual-indexed using unique barcodes and pooled for multiplexing. Sequencing was performed on the Illumina NovaSeq platform using paired-end 150 bp reads.