WGS of enterobacteriaceae clinical isolate
Libraries were prepared using Oxford Nanopore Rapid Barcoding Kit (SQK-RBK 110.96). Bacterial DNA was sequenced using MinION MK1B device (Oxford Nanopore Technologies, ltd., ONT, UK) using proprietary FlowCells r.9.4.1 and MinKnow User Interface Software. Basecalling of long reads was carried out by Dorado basecaller v.7.3.11 ((c) 2024 Oxford Nanopore Technologies, PLC.) in super-accuracy mode, with barcodes demultiplexed on-the-run.