Raw reads: W52Y23StK_L003
DNAse treatment (DNase I, Amplification Grade, Invitrogen) was performed to reduce unspecific amplification before library preparation for Nextseq sequencing for samples between week 37-52 2023. The COVIDSeq Assay kit [EM1] (Illumina) was used to generate the libraries. Samples were amplified using the Artic V5.3.2 NCOV-2019 Panel primers (IDTDNA). The resulting libraries were sequenced on the Illumina Nextseq platform using the NextSeq 500/550 High Output Kit v2.5 (150 Cycles) at the Functional Microbial Ecology Lab (FUME) within the Swedish University of Agricultural Sciences