WGS S aureus
Library preparation was prepared using the Illumina DNA preparation kit and TDT 10-bp unique dual indexing (UDI) indices. Whole-genome sequencing using an Illumina NextSeq 2000 system were provided by the Mulago Hospital (Kampala, Uganda), Demultiplexing, quality control, and adapter trimming were performed with BCL Convert v3.9.3 (Illumina).