Nanopore sequencing of Dengue and/or Chikungunya viruses: human blood samples
Library preparation followed the Oxford Nanopore Technologies (ONT) protocol for cDNA-PCR Barcoding Kit. Sequencing was conducted on a MinION device using flow cell version R9.4.1. Basecalling and demultiplexing were performed using Guppy with standard settings. Reads were quality-filtered and analyzed using GenomeDetective.