scRNAseq of Sus scrofa: weaned pig jejunum w/ Peyer's patches, mock inoculated, 5 days post-inoculation, pig 928, sequencing sample JPP3, sequencing lane 2 reads, additional sequencing run
Cells were isolated from proximal jejunum containing Peyer's patches. Cell partitioning and cDNA library creation was performed using the Chromium Single-cell kit with v3 chemistry (10X Genomics). Paired-end reads were sequenced on a NovaSeq 6000 flow cell lane to obtain deeper sequencing of one sample.