organism: soil metagenome
description: Rice plants exposed to 0% salinity and rice field microbiome. Rhizoplane samples. DNA was amplified with tagged 16S rRNA gene primers (341F and 806R) and build into TruSeq PCR free libraries. Sequencing was performed with a V3 Illumina kit in a Miseq Illumina machine.
attributes.tag: collection_date
attributes.value: 2018-11
attributes.tag: env_broad_scale
attributes.value: rhizosphere biome
attributes.tag: env_local_scale
attributes.value: Rhizoplane
attributes.tag: env_medium
attributes.value: RiceField
attributes.tag: geo_loc_name
attributes.value: Denmark: Copenhagen
attributes.tag: host
attributes.value: Oryza sativa
attributes.tag: lat_lon
attributes.value: 55.6802 N 12.5724 E
attributes.tag: growth_med
attributes.value: Plants grew in a sand/perlite (50/50 vol/vol) mixture and were watered every third day with sterile ddH20 and supplemented with fertilizer (modified Hoagland's formula).
attributes.tag: samp_salinity
attributes.value: NoSalt - 0%
attributes.tag: samp_size
attributes.value: 0.25 g
attributes.tag: BioSampleModel
attributes.value: MIMS.me
attributes.tag: BioSampleModel
attributes.value: MIGS/MIMS/MIMARKS.plant-associated