organism: soil metagenome
description: Rice plants exposed to 0.35% salinity and rice field microbiome. Bulk soil samples.  DNA was amplified with tagged 16S rRNA gene primers (341F and 806R) and build into TruSeq PCR free libraries. Sequencing was performed with a V3 Illumina kit in a Miseq Illumina machine.
attributes.tag: collection_date
attributes.value: 2018-11
attributes.tag: env_broad_scale
attributes.value: rhizosphere biome
attributes.tag: env_local_scale
attributes.value: Bulk soil
attributes.tag: env_medium
attributes.value: RiceField
attributes.tag: geo_loc_name
attributes.value: Denmark: Copenhagen
attributes.tag: host
attributes.value: Oryza sativa
attributes.tag: lat_lon
attributes.value: 55.6802 N 12.5724 E
attributes.tag: growth_med
attributes.value: Plants grew in a sand/perlite (50/50 vol/vol) mixture and were watered every third day with sterile ddH20 and supplemented with fertilizer (modified Hoagland's formula).
attributes.tag: samp_salinity
attributes.value: HighSalt - 0.35%
attributes.tag: samp_size
attributes.value: 0.25 g
attributes.tag: BioSampleModel
attributes.value: MIMS.me
attributes.tag: BioSampleModel
attributes.value: MIGS/MIMS/MIMARKS.plant-associated