title: Bemisia tabaci MED-Q2 bacteriomes whole-genome shotgun MinION reads
organism: Bemisia tabaci
description: Bemisia tabaci MED-Q2 bacteriomes whole-genome shotgun MinION reads
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2020-07-14T04:06:19Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2019-12-12T12:00:28Z
attributes.tag: External Id
attributes.value: SAMEA6412446
attributes.tag: INSDC center name
attributes.value: HUJI
attributes.tag: INSDC first public
attributes.value: 2020-07-14T04:06:19Z
attributes.tag: INSDC last update
attributes.value: 2019-12-12T12:00:28Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: BTMED-Q2-MinION
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: Spades v3.12.0, Canu v1.7.1, SSPACE-LongRead, Gapfiller v1.10, Bowtie2 v2.3.5.1, Pilon v.1.21
attributes.tag: binning parameters
attributes.value: Kraken2 strandard database plus all available Arsenophonus genomes
attributes.tag: binning software
attributes.value: Kraken2, Usearch v10
attributes.tag: collection date
attributes.value: 2017
attributes.tag: completeness score
attributes.value: 91.96
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.63
attributes.tag: environment (biome)
attributes.value: ENVO:00000469
attributes.tag: environment (feature)
attributes.value: ENVO:00000469
attributes.tag: environment (material)
attributes.value: PORO:0000162
attributes.tag: geographic location (country and/or sea)
attributes.value: Israel
attributes.tag: geographic location (latitude)
attributes.value: 32.7072363
attributes.tag: geographic location (longitude)
attributes.value: 35.1705322
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: Bemisia tabaci MED-Q2 bacteriomes
attributes.tag: metagenomic source
attributes.value: Bemisia tabaci
attributes.tag: project name
attributes.value: Arsenophonus strain ARBTMED-Q2 genome assembly
attributes.tag: sample derived from
attributes.value: ERS4178444
attributes.tag: sample name
attributes.value: BTMED-Q2-MinION
attributes.tag: scientific_name
attributes.value: Bemisia tabaci
attributes.tag: sequencing method
attributes.value: Illumina (NextSeq), Nanopore (MinION R9.4.1)
attributes.tag: taxonomic identity marker
attributes.value: Multi-marker approach