title: Hyaloperonospora arabidopsidis Waco9 genome sequencing
organism: Hyaloperonospora arabidopsidis
description: Genomic DNA was extracted from Hyaloperonospora arabidopsidis (Hpa) Waco9 isolate conidiospores. A paired-end 400 bp insert size library was prepared and sequenced on Illumina Genome Analyzer II. Genetic variations between Hpa Emoy2 and Waco9 were predicted using SAMtools. Hpa Emoy2 v8.3 genome sequence was corrected by substituting with Hpa Waco9 SNVs. Insertion and deletion variations were ignored.
attributes.tag: environmental package
attributes.value: MIGS/MIMS/MIMARKS.plant-associated
attributes.tag: investigation type
attributes.value: eukaryote
attributes.tag: isolate
attributes.value: Waco9
attributes.tag: biome
attributes.value: plant pathogen
attributes.tag: collection date
attributes.value: missing
attributes.tag: estimated size
attributes.value: missing
attributes.tag: feature
attributes.value: missing
attributes.tag: geographic location
attributes.value: missing
attributes.tag: isolation and growth condition
attributes.value: 21573066
attributes.tag: geographic location (latitude and longitude)
attributes.value: missing
attributes.tag: material
attributes.value: missing
attributes.tag: number of replicons
attributes.value: 1
attributes.tag: ploidy
attributes.value: diploid
attributes.tag: propagation
attributes.value: missing
attributes.tag: host
attributes.value: Arabidopsis thaliana
attributes.tag: BioSampleModel
attributes.value: MIGS.eu
attributes.tag: BioSampleModel
attributes.value: MIGS/MIMS/MIMARKS.plant-associated