organism: symbiont metagenome
description: This sample represents a metagenome assembled genome from ERS4359969,ERR3959528
attributes.tag: 16S rRNA recovered
attributes.value: Yes
attributes.tag: 16S rRNA recovery software
attributes.value: Barrnap;0.9
attributes.tag: ENA first public
attributes.value: 2020-12-12
attributes.tag: ENA last update
attributes.value: 2020-12-11
attributes.tag: External Id
attributes.value: SAMEA7706181
attributes.tag: INSDC center alias
attributes.value: Max Planck Institute for Marine Microbiology
attributes.tag: INSDC center name
attributes.value: Max Planck Institute for Marine Microbiology
attributes.tag: INSDC first public
attributes.value: 2020-12-12T04:07:45Z
attributes.tag: INSDC last update
attributes.value: 2020-12-11T19:40:54Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: gfbio:e82c7dd0-6ea6-4a9f-a5f1-e2cc6c942fe5:SOX_BS_3386_F
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: Megahit;1.0.3;max kmer 127, default parameters otherwise
attributes.tag: binning parameters
attributes.value: coverage, tetra-nucleotide frequency
attributes.tag: binning software
attributes.value: Metabat2
attributes.tag: broker name
attributes.value: German Federation for Biological Data (GFBio)
attributes.tag: collection date
attributes.value: 2001-07-19
attributes.tag: completeness score
attributes.value: 94.25
attributes.tag: completeness software
attributes.value: checkm
attributes.tag: contamination score
attributes.value: 2.2
attributes.tag: environment (biome)
attributes.value: Marine hydrothermal vent biome [ENVO:01000030]
attributes.tag: environment (feature)
attributes.value: Bathymodiolus gill tissue material [ENVO:01001393]
attributes.tag: environment (material)
attributes.value: Bathymodiolus-dominated oceanic mussel reef [ENVO:01001385], Bathymodiolus-dominated oceanic mussel bed [ENVO:01001390]
attributes.tag: geographic location (country and/or sea)
attributes.value: Atlantic Ocean
attributes.tag: geographic location (depth)
attributes.value: 3045
attributes.tag: geographic location (latitude)
attributes.value: 29.166667
attributes.tag: geographic location (longitude)
attributes.value: -43.166667
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: Bathymodiolus sp. Tissue
attributes.tag: metagenomic source
attributes.value: symbiont metagenome
attributes.tag: project name
attributes.value: institutional project
attributes.tag: sample derived from
attributes.value: ERS4359969,ERR3959528
attributes.tag: sample name
attributes.value: gfbio:e82c7dd0-6ea6-4a9f-a5f1-e2cc6c942fe5:SOX_BS_3386_F
attributes.tag: sequencing method
attributes.value: HiSeq 3000
attributes.tag: tRNA extraction software
attributes.value: [14]
attributes.tag: taxonomic identity marker
attributes.value: 32S rRNA gene, gammaproteobacterial marker genes