title: Genome-wide structure and organization of eukaryotic pre-initiation complexes
organism: Saccharomyces cerevisiae S288C
description: SRA046523 contains three experiments.    Experiment 1. 35 bp fragment run was performed in SRX114994, which contains the following 5 runs: SRR397550 contains Bdf1. SRR397551 contains TFIIE. SRR397552 contains TFIIF. SRR397553 contains TFIIK. SRR397554 contains Ssl1.    Experiment 2. 35 bp barcoded fragment run was performed in SRX114680. 4 bp barcode sequences are located at the 5 prim end of each fragment sequences (In 35 bp F3 fragment sequences, first 4 bp are barcode. 5th to 35th bp are genomic sequences from each sample). SRX114680 contains the following 3 runs with indicated barcode sequences. SRR396797 contains two samples: TFIIB (GATC) and Ssl2 (CAAT). SRR396798 contains two samples: TBP (replicate 1, TAGC) and TBP (replicate 2, GCCT). SRR396815 contains two samples: Pol II (TCCC) and Tfb1 (AGCG).    Experiment 3. Barcoded paired-end run was performed in SRX114691. 35 bp F3 (mate 1) run contains genomic sequences. 10 bp R2 (mate 2) run contains  6 bp barcoded sequences (first 6 bp are barcode in 10 bp R3 paired-end sequences). SRX114691 contains the following run with indicated barcode sequences: SRR396796 contains Taf1 (GTGCCC).