title: 13114.bowen.74.s004
organism: marine sediment metagenome
description: Salt marsh sediment sample collected from the Plum Island LTER Site in Rowley, MA at Nelson Creek underlying tall Spartina alterniflora
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723400
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:00Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.bowen.74.s004
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 224.01767323947232
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 223.34450948274412
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 1196.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 6.405212474563407
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 107.9404673
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 556.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 4.98541525
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 142.53043328475042
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 708.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 6.359616085419939
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 63.43773125
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 286.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 4.904450175
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 1197.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 6.405960926417579
attributes.tag: barcode_prefix
attributes.value: bowen.74.s004
attributes.tag: collection_timestamp
attributes.value: 5/15/14 0:00
attributes.tag: depth_sample
attributes.value: 0
attributes.tag: elevation
attributes.value: 0
attributes.tag: emp500_principal_investigator
attributes.value: Bowen
attributes.tag: emp500_study_id
attributes.value: 74
attributes.tag: emp500_title
attributes.value: Massachusetts salt marsh sediments
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Free-living
attributes.tag: empo_2
attributes.value: Saline
attributes.tag: empo_3
attributes.value: Sediment (saline)
attributes.tag: env biome
attributes.value: marine salt marsh biome
attributes.tag: env feature
attributes.value: marine benthic feature
attributes.tag: env package
attributes.value: sediment
attributes.tag: env_material
attributes.value: marine sediment
attributes.tag: environmental_package
attributes.value: sediment
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_bowen_74_s004_a03_M_239
attributes.tag: gcms_sequence
attributes.value: 239
attributes.tag: geo loc name
attributes.value: USA: Commonwealth of Massachusetts,Plum Island
attributes.tag: host subject id
attributes.value: Bowen74.sed4
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 42.742292
attributes.tag: lcms_batch
attributes.value: 1.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 1F3
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 1F3_2_34_bowen-74-s004-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 1F3_2_34_bowen-74-s004-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: -70.826692
attributes.tag: original sample id
attributes.value: Bowen74.sed4
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I and Boston, MA
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Plum Island sediments
attributes.tag: read_count_shotgun_r1
attributes.value: 11756206.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 118674.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 45483.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.bowen.74.s004
attributes.tag: sample type
attributes.value: sediment
attributes.tag: sample_name_original
attributes.value: Bowen74.sed4
attributes.tag: sample_name_plus_plate
attributes.value: 2.Bowen74.sed4
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Train
attributes.tag: study_sample_number
attributes.value: 4
attributes.tag: tier
attributes.value: 1