title: 13114.sandin.54.s004
organism: gut metagenome
description: Atherinopsis californiensis gut contents
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723500
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:08Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.sandin.54.s004
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 70.82180708254964
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 46.29227867
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 173.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 4.455173487
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 39.38201981
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 134.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 4.3968472310000015
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 260.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 5.188749357462863
attributes.tag: barcode_prefix
attributes.value: sandin.54.s004
attributes.tag: chem_administration
attributes.value: not provided
attributes.tag: collection_timestamp
attributes.value: 11/23/13 16:00
attributes.tag: depth_sample
attributes.value: 10
attributes.tag: elevation
attributes.value: 0
attributes.tag: emp500_principal_investigator
attributes.value: Sandin
attributes.tag: emp500_study_id
attributes.value: 54
attributes.tag: emp500_title
attributes.value: Fish gut contents
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal proximal gut
attributes.tag: env biome
attributes.value: marine biome
attributes.tag: env feature
attributes.value: animal-associated habitat
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: intestine environment
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_sandin_54_s004_a03_M_181
attributes.tag: gcms_sequence
attributes.value: 181
attributes.tag: geo loc name
attributes.value: USA: State of California,Scripps Coastal Reserve
attributes.tag: gravidity
attributes.value: TRUE
attributes.tag: host age
attributes.value: not provided
attributes.tag: host body habitat
attributes.value: UBERON:gastrointestinal system
attributes.tag: host body product
attributes.value: UBERON:digestive tract
attributes.tag: host body site
attributes.value: UBERON:lumen of gut
attributes.tag: host common name
attributes.value: jacksmelt
attributes.tag: host diet
attributes.value: omnivore
attributes.tag: host last meal
attributes.value: not provided
attributes.tag: host length mm
attributes.value: 280
attributes.tag: host life stage
attributes.value: not provided
attributes.tag: host sex
attributes.value: female
attributes.tag: host subject id
attributes.value: AC4B
attributes.tag: host taxid
attributes.value: 1311532
attributes.tag: host tot mass g
attributes.value: 260.4
attributes.tag: host_family_relationship
attributes.value: vertebrate; osmoregulator
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 32.86715
attributes.tag: lcms_batch
attributes.value: 5.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 5B11
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 5B11_3_13_sandin-54-s004-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 5B11_3_13_sandin-54-s004-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: -117.2573472
attributes.tag: original sample id
attributes.value: Sandin54.Blanton.host.associated.4
attributes.tag: physical_specimen_location
attributes.value: SIO Allen Lab
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: SCB_teleost
attributes.tag: read_count_shotgun_r1
attributes.value: 16412519.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 45062.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 8959.0
attributes.tag: samp_store_dur
attributes.value: 26 months
attributes.tag: samp_store_temp
attributes.value: -80Celsius
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.sandin.54.s004
attributes.tag: sample type
attributes.value: fish gut contents
attributes.tag: sample_name_original
attributes.value: Sandin54.Blanton.host.associated.4
attributes.tag: sample_name_plus_plate
attributes.value: 4.Sandin54.Blanton.host.associated.4
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 4