title: 13114.thomas.18.s029
organism: sponge metagenome
description: S.flabelliformis: 1tube of bacterial pellet called STY3bac and 10 tubes of tissue called STY3.1 to STY3.10
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723707
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:04Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T23:55:56Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.thomas.18.s029
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 60.259165246079185
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 60.259165246079185
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 239.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 4.049823902523913
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 37.20768038
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 114.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 3.312959681
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 52.72577616343506
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 207.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 4.041444655704531
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 24.01825404
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 65.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 3.2916462710000003
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 239.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 4.049823902523913
attributes.tag: barcode_prefix
attributes.value: thomas.18.s029
attributes.tag: collection_timestamp
attributes.value: 12/23/15 0:00
attributes.tag: depth_sample
attributes.value: 9
attributes.tag: elevation
attributes.value: 0
attributes.tag: emp500_principal_investigator
attributes.value: Thomas
attributes.tag: emp500_study_id
attributes.value: 18
attributes.tag: emp500_title
attributes.value: Ocean sponges
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal corpus
attributes.tag: env biome
attributes.value: marine coral reef biome
attributes.tag: env feature
attributes.value: marine benthic feature
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: organic material
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: experimental_factor
attributes.value: none, natural samples
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_thomas_18_s029_a03_M_028
attributes.tag: gcms_sequence
attributes.value: 028
attributes.tag: geo loc name
attributes.value: Australia:Queensland,Great Barrier Reef,Davies Reef
attributes.tag: host body habitat
attributes.value: UBERON:multicellular organism
attributes.tag: host body product
attributes.value: UBERON:multicellular organism
attributes.tag: host body site
attributes.value: UBERON:multicellular organism
attributes.tag: host life stage
attributes.value: adult
attributes.tag: host scientific name
attributes.value: Stylissa flabelliformis
attributes.tag: host subject id
attributes.value: S.flabelliformis_rep3
attributes.tag: host taxid
attributes.value: 237128
attributes.tag: host_disease_stat
attributes.value: healthy
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: -18.822567
attributes.tag: lcms_batch
attributes.value: 4.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 4H1
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 4H1_7_37_thomas-18-s029-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 4H1_7_37_thomas-18-s029-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: 147.63755
attributes.tag: original sample id
attributes.value: Thomas18.STY3bac
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: EMP sponge microbiome deep sequencing
attributes.tag: read_count_shotgun_r1
attributes.value: 13101656.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 9182.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 16564.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.thomas.18.s029
attributes.tag: sample type
attributes.value: sponge tissue
attributes.tag: sample_name_original
attributes.value: Thomas18.STY3bac
attributes.tag: sample_name_plus_plate
attributes.value: 4.Thomas18.STY3bac
attributes.tag: sampling method
attributes.value: fractionated
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 29
attributes.tag: temperature_deg_c
attributes.value: 29
attributes.tag: tier
attributes.value: 1