title: 13114.minich.76.s002
organism: gut metagenome
description: cow manure
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723456
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:05Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.minich.76.s002
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 283.35562650349584
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 282.735203711748
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 1882.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 5.598408089102
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 151.99278669999995
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 1102.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 4.935628405
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 131.7440144072848
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 769.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 5.5165289085549984
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 60.24111865
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 357.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 4.779657418999999
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 1885.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 5.598755525518364
attributes.tag: barcode_prefix
attributes.value: minich.76.s002
attributes.tag: collection_timestamp
attributes.value: 7/1/15 0:00
attributes.tag: elevation
attributes.value: 782
attributes.tag: emp500_principal_investigator
attributes.value: Minich
attributes.tag: emp500_study_id
attributes.value: 76
attributes.tag: emp500_title
attributes.value: Livestock feces
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal distal gut
attributes.tag: env biome
attributes.value: dense settlement biome
attributes.tag: env feature
attributes.value: host-associated habitat
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: animal manure
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_minich_76_s002_a03_M_262
attributes.tag: gcms_sequence
attributes.value: 262
attributes.tag: geo loc name
attributes.value: Malawi:Zomba
attributes.tag: host body habitat
attributes.value: UBERON:feces
attributes.tag: host body product
attributes.value: UBERON:feces
attributes.tag: host body site
attributes.value: UBERON:feces
attributes.tag: host class
attributes.value: Mammalia
attributes.tag: host common name
attributes.value: cattle
attributes.tag: host diet
attributes.value: herbivore
attributes.tag: host order
attributes.value: Artiodactyla
attributes.tag: host scientific name
attributes.value: Bos taurus
attributes.tag: host subject id
attributes.value: CM1
attributes.tag: host taxid
attributes.value: 9913
attributes.tag: host_family
attributes.value: Bovidae
attributes.tag: host_flight
attributes.value: terrestrial, flightless
attributes.tag: host_phylum
attributes.value: Chordata
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 15.2769
attributes.tag: lcms_batch
attributes.value: 5.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 5B2
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 5B2_2_66_minich-76-s002-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 5B2_2_66_minich-76-s002-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: 35.3989
attributes.tag: original sample id
attributes.value: Minich76.CM
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Malawi fish pond manuring
attributes.tag: read_count_shotgun_r1
attributes.value: 18544183.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 472742.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 143639.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.minich.76.s002
attributes.tag: sample type
attributes.value: stool
attributes.tag: sample_name_original
attributes.value: Minich76.CM
attributes.tag: sample_name_plus_plate
attributes.value: 1.Minich76.CM
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 2