title: 13114.bowen.74.s012
organism: marine sediment metagenome
description: Salt marsh sediment sample collected from the Plum Island LTER Site in Rowley, MA at Sweeney Creek underlying Spartina patens
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723404
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:00Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.bowen.74.s012
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 233.2451489329953
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 232.22360492570442
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 1282.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 7.211872311885843
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 121.8955137
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 702.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 6.9854954970000005
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 198.99703002290332
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 1069.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 7.180138129586832
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 102.6235038
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 547.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 6.91667604
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 1284.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 7.212800254065955
attributes.tag: barcode_prefix
attributes.value: bowen.74.s012
attributes.tag: collection_timestamp
attributes.value: 9/15/14 0:00
attributes.tag: depth_sample
attributes.value: 0
attributes.tag: elevation
attributes.value: 0
attributes.tag: emp500_principal_investigator
attributes.value: Bowen
attributes.tag: emp500_study_id
attributes.value: 74
attributes.tag: emp500_title
attributes.value: Massachusetts salt marsh sediments
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Free-living
attributes.tag: empo_2
attributes.value: Saline
attributes.tag: empo_3
attributes.value: Sediment (saline)
attributes.tag: env biome
attributes.value: marine salt marsh biome
attributes.tag: env feature
attributes.value: marine benthic feature
attributes.tag: env package
attributes.value: sediment
attributes.tag: env_material
attributes.value: marine sediment
attributes.tag: environmental_package
attributes.value: sediment
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_bowen_74_s012_a03_M_247
attributes.tag: gcms_sequence
attributes.value: 247
attributes.tag: geo loc name
attributes.value: USA: Commonwealth of Massachusetts,Plum Island
attributes.tag: host subject id
attributes.value: Bowen74.sed12
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 42.722275
attributes.tag: lcms_batch
attributes.value: 1.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 1G3
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 1G3_2_73_bowen-74-s012-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 1G3_2_73_bowen-74-s012-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: -70.846648
attributes.tag: original sample id
attributes.value: Bowen74.sed12
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I and Boston, MA
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Plum Island sediments
attributes.tag: read_count_shotgun_r1
attributes.value: 13401542.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 41475.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 18039.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.bowen.74.s012
attributes.tag: sample type
attributes.value: sediment
attributes.tag: sample_name_original
attributes.value: Bowen74.sed12
attributes.tag: sample_name_plus_plate
attributes.value: 4.Bowen74.sed12
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 12
attributes.tag: tier
attributes.value: 1