title: 13114.berry.2.s013
organism: freshwater sediment metagenome
description: Freshwater sediment core slice from Uncas Pond MA. Aseptically collected subsample.
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723600
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:04Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T23:55:46Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.berry.2.s013
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 226.1156592319376
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 224.29162810994217
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 994.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 7.550340230790852
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 85.49803129
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 466.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 6.682778764
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 200.8728755642162
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 860.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 7.511376251562518
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 73.50430852
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 396.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 6.615554284
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 1000.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 7.555438136126519
attributes.tag: barcode_prefix
attributes.value: berry.2.s013
attributes.tag: collection_timestamp
attributes.value: 3/14/02 0:00
attributes.tag: depth_sample
attributes.value: 0.06
attributes.tag: elevation
attributes.value: 92.7
attributes.tag: emp500_principal_investigator
attributes.value: Berry
attributes.tag: emp500_study_id
attributes.value: 2
attributes.tag: emp500_title
attributes.value: Postglacial pond sediment profiles
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Free-living
attributes.tag: empo_2
attributes.value: Non-saline
attributes.tag: empo_3
attributes.value: Sediment (non-saline)
attributes.tag: env biome
attributes.value: Small lake biome
attributes.tag: env feature
attributes.value: pond bed
attributes.tag: env package
attributes.value: sediment
attributes.tag: env_material
attributes.value: lake sediment
attributes.tag: environmental_package
attributes.value: sediment
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_berry_2_s013_a03_M_259
attributes.tag: gcms_sequence
attributes.value: 259
attributes.tag: geo loc name
attributes.value: USA: State of Massachusetts,Norfolk County
attributes.tag: host subject id
attributes.value: Un6
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 42.06
attributes.tag: lcms_batch
attributes.value: 1.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 1A7
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 1A7_1_9_berry-2-s013-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 1A7_1_9_berry-2-s013-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: -71.37761
attributes.tag: original sample id
attributes.value: Berry2.sediment.Un6
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I and Berry Lab -80C Freezer, UC Davis
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Biodiversity and Functional Patterns of Microbial Assemblages in Postglacial Pond Sediment Profiles
attributes.tag: read_count_shotgun_r1
attributes.value: 14528843.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 19574.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 15277.0
attributes.tag: samp_store_dur
attributes.value: 2002-2016
attributes.tag: samp_store_loc
attributes.value: Davis CA
attributes.tag: samp_store_temp
attributes.value: -80
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.berry.2.s013
attributes.tag: sample type
attributes.value: sediment
attributes.tag: sample_name_original
attributes.value: Berry2.sediment.Un6
attributes.tag: sample_name_plus_plate
attributes.value: 1.Berry2.sediment.Un6
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Train
attributes.tag: study_sample_number
attributes.value: 13
attributes.tag: tier
attributes.value: 1