title: 13114.berry.2.s004
organism: freshwater sediment metagenome
description: Freshwater sediment core slice from Doe Pond MA. Aseptically collected subsample.
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723392
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:06:59Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.berry.2.s004
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 83.8942142556516
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 232.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 5.458109766996946
attributes.tag: barcode_prefix
attributes.value: berry.2.s004
attributes.tag: collection_timestamp
attributes.value: 8/13/02 0:00
attributes.tag: depth_sample
attributes.value: 0.41
attributes.tag: elevation
attributes.value: 75.6
attributes.tag: emp500_principal_investigator
attributes.value: Berry
attributes.tag: emp500_study_id
attributes.value: 2
attributes.tag: emp500_title
attributes.value: Postglacial pond sediment profiles
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Free-living
attributes.tag: empo_2
attributes.value: Non-saline
attributes.tag: empo_3
attributes.value: Sediment (non-saline)
attributes.tag: env biome
attributes.value: Small lake biome
attributes.tag: env feature
attributes.value: pond bed
attributes.tag: env package
attributes.value: sediment
attributes.tag: env_material
attributes.value: lake sediment
attributes.tag: environmental_package
attributes.value: sediment
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_berry_2_s004_a03_M_092
attributes.tag: gcms_sequence
attributes.value: 092
attributes.tag: geo loc name
attributes.value: USA: State of Massachusetts,Hampden County
attributes.tag: host subject id
attributes.value: Do41
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 42.17566
attributes.tag: lcms_batch
attributes.value: 1.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 1C7
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 1C7_1_41_berry-2-s004-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 1C7_1_41_berry-2-s004-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: -72.7
attributes.tag: original sample id
attributes.value: Berry2.sediment.Do41
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I and Berry Lab -80C Freezer, UC Davis
attributes.tag: physical_specimen_remaining
attributes.value: FALSE
attributes.tag: project name
attributes.value: Biodiversity and Functional Patterns of Microbial Assemblages in Postglacial Pond Sediment Profiles
attributes.tag: read_count_shotgun_r1
attributes.value: 6355810.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 2514.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 5919.0
attributes.tag: samp_store_dur
attributes.value: 2002-2016
attributes.tag: samp_store_loc
attributes.value: Davis CA
attributes.tag: samp_store_temp
attributes.value: -80
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.berry.2.s004
attributes.tag: sample type
attributes.value: sediment
attributes.tag: sample_name_original
attributes.value: Berry2.sediment.Do41
attributes.tag: sample_name_plus_plate
attributes.value: 1.Berry2.sediment.Do41
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 4
attributes.tag: tier
attributes.value: 1