title: 13114.song.53.s014
organism: gut metagenome
description: whooping crane fecal sample
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723536
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:11Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.song.53.s014
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 139.9068632834469
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 139.90198055709422
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 863.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 4.639825859063132
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 84.49619712
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 455.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 3.860472184
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 75.7189184968147
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 373.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 4.574959223171521
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 37.35955732
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 138.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 3.821314711
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 864.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 4.6400275493787175
attributes.tag: barcode_prefix
attributes.value: song.53.s014
attributes.tag: collection_timestamp
attributes.value: 10/23/15 0:00
attributes.tag: depth_sample
attributes.value: 0
attributes.tag: elevation
attributes.value: 16
attributes.tag: emp500_principal_investigator
attributes.value: Song
attributes.tag: emp500_study_id
attributes.value: 53
attributes.tag: emp500_title
attributes.value: Captive bird feces
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal distal gut
attributes.tag: env biome
attributes.value: urban biome
attributes.tag: env feature
attributes.value: animal-associated habitat
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: feces
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_song_53_s014_a03_M_177
attributes.tag: gcms_sequence
attributes.value: 177
attributes.tag: geo loc name
attributes.value: USA: State of Maryland,National Zoo
attributes.tag: host body habitat
attributes.value: UBERON:feces
attributes.tag: host body product
attributes.value: UBERON:feces
attributes.tag: host body site
attributes.value: UBERON:feces
attributes.tag: host class
attributes.value: Aves
attributes.tag: host common name
attributes.value: Whooping crane
attributes.tag: host diet
attributes.value: omnivore
attributes.tag: host order
attributes.value: Gruiformes
attributes.tag: host scientific name
attributes.value: Grus americana
attributes.tag: host sex
attributes.value: not determined
attributes.tag: host subject id
attributes.value: Natl.whooping.crane
attributes.tag: host taxid
attributes.value: 9117
attributes.tag: host_family
attributes.value: Gruidae
attributes.tag: host_flight
attributes.value: terrestrial, flight
attributes.tag: host_phylum
attributes.value: Chordata
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 38.93
attributes.tag: lcms_batch
attributes.value: 7.00
attributes.tag: lcms_extraction_protocol
attributes.value: Swabs_201901_UCSD
attributes.tag: lcms_position
attributes.value: 7D11
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 7D11_8_40_song-53-s014-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 7D11_8_40_song-53-s014-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Swabs
attributes.tag: longitude
attributes.value: -77.05
attributes.tag: original sample id
attributes.value: Song53.25014
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: EMP500 Song Study 53
attributes.tag: read_count_shotgun_r1
attributes.value: 16098952.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 719890.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 126441.0
attributes.tag: samp_store_loc
attributes.value: CU Boulder
attributes.tag: samp_store_temp
attributes.value: -20C
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.song.53.s014
attributes.tag: sample type
attributes.value: stool
attributes.tag: sample_name_original
attributes.value: Song53.25014
attributes.tag: sample_name_plus_plate
attributes.value: 5.Song53.25014
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 14