title: 13114.mousseau.88.s081
organism: gut metagenome
description: Chernobyl vole feces mousseau.88.s081
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723656
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:04Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T23:55:51Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.mousseau.88.s081
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 90.62366670473259
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 90.62366670473259
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 402.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 5.275661340307287
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 64.73847894
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 277.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 5.176487388
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 66.33133978325189
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 280.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 5.272643672936564
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 39.01892246
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 152.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 5.087176432
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 402.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 5.275661340307287
attributes.tag: barcode_prefix
attributes.value: mousseau.88.s081
attributes.tag: collection_timestamp
attributes.value: 7/18/16 12:30
attributes.tag: elevation
attributes.value: 113.1
attributes.tag: emp500_principal_investigator
attributes.value: Mousseau
attributes.tag: emp500_study_id
attributes.value: 88
attributes.tag: emp500_title
attributes.value: Chernobyl vole feces
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal distal gut
attributes.tag: env biome
attributes.value: temperate mixed forest biome
attributes.tag: env feature
attributes.value: host-associated habitat
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: feces
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: experiment_code
attributes.value: Outgroup
attributes.tag: experimental_factor
attributes.value: radiation level
attributes.tag: geo loc name
attributes.value: Ukraine:City of Chernobyl
attributes.tag: host body habitat
attributes.value: UBERON:feces
attributes.tag: host body product
attributes.value: UBERON:feces
attributes.tag: host body site
attributes.value: UBERON:feces
attributes.tag: host class
attributes.value: Mammalia
attributes.tag: host common name
attributes.value: bank vole
attributes.tag: host diet
attributes.value: herbivore/insectivore
attributes.tag: host order
attributes.value: Rodentia
attributes.tag: host scientific name
attributes.value: Myodes glareolus
attributes.tag: host sex
attributes.value: female
attributes.tag: host state
attributes.value: ad
attributes.tag: host subject id
attributes.value: K96
attributes.tag: host taxid
attributes.value: 447135
attributes.tag: host treatment
attributes.value: control
attributes.tag: host_family
attributes.value: Cricetidae
attributes.tag: host_flight
attributes.value: terrestrial, flightless
attributes.tag: host_phylum
attributes.value: Chordata
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 50.525859
attributes.tag: lcms_batch
attributes.value: 6.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 6A6
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 6A6_4_72_mousseau-88-s081-a02
attributes.tag: lcms_sample_name_fbmn
attributes.value: 6A6_4_72_mousseau-88-s081-a02.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: loc_rad_geiger_gamma_usv_per_h
attributes.value: <0.15
attributes.tag: location
attributes.value: 4
attributes.tag: location code
attributes.value: RS
attributes.tag: longitude
attributes.value: 30.436933
attributes.tag: original sample id
attributes.value: Mousseau88.FIN.K96
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I and University of Oulu, Finland
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Chernobyl Microbiome project_LA
attributes.tag: read_count_shotgun_r1
attributes.value: 6367680.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 234038.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 45257.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.mousseau.88.s081
attributes.tag: sample type
attributes.value: stool
attributes.tag: sample_mass_grams
attributes.value: 0.2
attributes.tag: sample_name_original
attributes.value: Mousseau88.FIN.K96
attributes.tag: sample_name_plus_plate
attributes.value: 6.Mousseau88.FIN.K96
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Train
attributes.tag: store_cond
attributes.value: 90 days -80C
attributes.tag: study_sample_number
attributes.value: 81
attributes.tag: tier
attributes.value: 3
attributes.tag: trap
attributes.value: 6