title: 13114.minich.76.s004
organism: gut metagenome
description: layer chicken manure
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723458
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:05Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.minich.76.s004
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 165.26573395527268
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 165.24733071639392
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 1122.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 4.821793682350305
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 85.91370963
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 513.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 3.555485144
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 58.0255368984433
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 281.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 4.7717383443894015
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 24.08201862
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 86.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 3.490748095
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 1125.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 4.82190645937559
attributes.tag: barcode_prefix
attributes.value: minich.76.s004
attributes.tag: collection_timestamp
attributes.value: 7/1/15 0:00
attributes.tag: elevation
attributes.value: 782
attributes.tag: emp500_principal_investigator
attributes.value: Minich
attributes.tag: emp500_study_id
attributes.value: 76
attributes.tag: emp500_title
attributes.value: Livestock feces
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal distal gut
attributes.tag: env biome
attributes.value: dense settlement biome
attributes.tag: env feature
attributes.value: host-associated habitat
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: animal manure
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_minich_76_s004_a03_M_264
attributes.tag: gcms_sequence
attributes.value: 264
attributes.tag: geo loc name
attributes.value: Malawi:Zomba
attributes.tag: host body habitat
attributes.value: UBERON:feces
attributes.tag: host body product
attributes.value: UBERON:feces
attributes.tag: host body site
attributes.value: UBERON:feces
attributes.tag: host class
attributes.value: Aves
attributes.tag: host common name
attributes.value: chicken
attributes.tag: host diet
attributes.value: omnivore
attributes.tag: host order
attributes.value: Galliformes
attributes.tag: host scientific name
attributes.value: Gallus gallus
attributes.tag: host subject id
attributes.value: LM1
attributes.tag: host taxid
attributes.value: 9031
attributes.tag: host_family
attributes.value: Phasianidae
attributes.tag: host_flight
attributes.value: terrestrial, flightless
attributes.tag: host_phylum
attributes.value: Chordata
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 15.2769
attributes.tag: lcms_batch
attributes.value: 5.00
attributes.tag: lcms_extraction_protocol
attributes.value: Bulk_201901_UCSD
attributes.tag: lcms_position
attributes.value: 5A11
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: lcms_sample_name_cmn
attributes.value: 5A11_2_63_minich-76-s004-a04
attributes.tag: lcms_sample_name_fbmn
attributes.value: 5A11_2_63_minich-76-s004-a04.mzML
attributes.tag: lcms_sample_type
attributes.value: Sample
attributes.tag: lcms_sample_type_sub
attributes.value: Bulk
attributes.tag: longitude
attributes.value: 35.3989
attributes.tag: original sample id
attributes.value: Minich76.LM
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Malawi fish pond manuring
attributes.tag: read_count_shotgun_r1
attributes.value: 3638612.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 2424796.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 803988.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.minich.76.s004
attributes.tag: sample type
attributes.value: stool
attributes.tag: sample_name_original
attributes.value: Minich76.LM
attributes.tag: sample_name_plus_plate
attributes.value: 4.Minich76.LM
attributes.tag: sampling method
attributes.value: bulk
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 4