title: 13114.smith.39.s005
organism: algae metagenome
description: Algae swab from Palmyra
attributes.tag: ENA first public
attributes.value: 2020-12-17
attributes.tag: ENA last update
attributes.value: 2020-12-15
attributes.tag: External Id
attributes.value: SAMEA7723510
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-17T04:08:05Z
attributes.tag: INSDC last update
attributes.value: 2020-12-15T22:07:09Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_13114:13114.smith.39.s005
attributes.tag: alpha_shotgun_woltka_faithspd
attributes.value: 175.62918887107185
attributes.tag: alpha_shotgun_woltka_min10k_faithspd
attributes.value: 175.41868026566112
attributes.tag: alpha_shotgun_woltka_min10k_richness
attributes.value: 1015.0
attributes.tag: alpha_shotgun_woltka_min10k_shannon
attributes.value: 7.656773256720498
attributes.tag: alpha_shotgun_woltka_min3450_faithspd
attributes.value: 102.662545
attributes.tag: alpha_shotgun_woltka_min3450_richness
attributes.value: 501.0
attributes.tag: alpha_shotgun_woltka_min3450_shannon
attributes.value: 6.635333999
attributes.tag: alpha_shotgun_woltka_rar10k_faithspd
attributes.value: 149.00206007063568
attributes.tag: alpha_shotgun_woltka_rar10k_richness
attributes.value: 832.0
attributes.tag: alpha_shotgun_woltka_rar10k_shannon
attributes.value: 7.605789516080589
attributes.tag: alpha_shotgun_woltka_rar3450_faithspd
attributes.value: 81.91856558
attributes.tag: alpha_shotgun_woltka_rar3450_richness
attributes.value: 365.0
attributes.tag: alpha_shotgun_woltka_rar3450_shannon
attributes.value: 6.547520341
attributes.tag: alpha_shotgun_woltka_richness
attributes.value: 1016.0
attributes.tag: alpha_shotgun_woltka_shannon
attributes.value: 7.6574428104745875
attributes.tag: barcode_prefix
attributes.value: smith.39.s005
attributes.tag: collection_timestamp
attributes.value: 10/4/15 0:00
attributes.tag: depth_sample
attributes.value: 5
attributes.tag: elevation
attributes.value: 0
attributes.tag: emp500_principal_investigator
attributes.value: Smith
attributes.tag: emp500_study_id
attributes.value: 39
attributes.tag: emp500_title
attributes.value: Palmyra algae
attributes.tag: empo_0
attributes.value: EMP sample
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Plant
attributes.tag: empo_3
attributes.value: Plant surface
attributes.tag: env biome
attributes.value: marine reef biome
attributes.tag: env feature
attributes.value: marine benthic feature
attributes.tag: env package
attributes.value: host-associated
attributes.tag: env_material
attributes.value: organic material
attributes.tag: environmental_package
attributes.value: host-associated
attributes.tag: gcms_analysis_batch
attributes.value: note applicable
attributes.tag: gcms_run_location
attributes.value: UCSD
attributes.tag: gcms_sample_name
attributes.value: EMP_Feces_smith_39_s005_a03_M_065
attributes.tag: gcms_sequence
attributes.value: 065
attributes.tag: geo loc name
attributes.value: Oceania:Kiribati:Northern Line Islands:Palmyra Atoll
attributes.tag: host body habitat
attributes.value: UBERON:multicellular organism
attributes.tag: host body product
attributes.value: UBERON:multicellular organism
attributes.tag: host body site
attributes.value: UBERON:multicellular organism
attributes.tag: host scientific name
attributes.value: Halimeda opuntia
attributes.tag: host subject id
attributes.value: HAL
attributes.tag: host taxid
attributes.value: 118223
attributes.tag: host_common_name_provided
attributes.value: Halimeda opuntia
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: latitude
attributes.value: 5.8693
attributes.tag: lcms_replicate
attributes.value: no
attributes.tag: longitude
attributes.value: -162.11089
attributes.tag: original sample id
attributes.value: Smith39.HAL
attributes.tag: physical_specimen_location
attributes.value: UCSD Knight Lab Freezer I
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: project name
attributes.value: Algae from Palmyra Atoll
attributes.tag: read_count_shotgun_r1
attributes.value: 14064295.0
attributes.tag: read_count_shotgun_rep200
attributes.value: 58332.0
attributes.tag: read_count_shotgun_woltka_uniq
attributes.value: 21426.0
attributes.tag: sample name
attributes.value: qiita_sid_13114:13114.smith.39.s005
attributes.tag: sample type
attributes.value: algae
attributes.tag: sample_name_original
attributes.value: Smith39.HAL
attributes.tag: sample_name_plus_plate
attributes.value: 1.Smith39.HAL
attributes.tag: sampling method
attributes.value: bulk or swab
attributes.tag: site name
attributes.value: Penguin Spit Middle
attributes.tag: songbird_train_empo_3
attributes.value: Test
attributes.tag: study_sample_number
attributes.value: 5