title: scrJUQ059
organism: Homo sapiens
description: Protocols: Samples were collected during resection surgery or biopsy in the University Hospital of Leuven , Belgium. The tumour sample macroscopically examined for tumour positioning. The tumour sample was subsequently divided in pieces, with one piece containing mainly tissue derived from the tumour core, one piece containing tissue mainly derived from the tumour border. For some samples, the tissues originate from the same ovarian cancer patients and include a samples taken at the same time from the primary tumor (ovarian), and the metastasized sites (peritoneum and omentum.) Single cell suspensions were converted to barcoded Drop-seq libraries by using the Chromium Single Cell 3' or 5' Library, Gel Bead & Multiplex Kit and Chip Kit (10X Genomics; Pleasanton, California, USA), aiming for an estimated 4,000 cells per library. Samples were processed using kits pertaining to V2 barcoding chemistry of 10X Genomics.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2020-07-21T17:04:43Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2019-07-08T19:24:18Z
attributes.tag: External Id
attributes.value: SAMEA5762709
attributes.tag: INSDC center name
attributes.value: VIB Center for Cancer Biology (CCB) Laboratory for Translational Genetics Department of Human Genetics KULeuven
attributes.tag: INSDC first public
attributes.value: 2020-07-21T17:04:43Z
attributes.tag: INSDC last update
attributes.value: 2019-07-08T19:24:18Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: E-MTAB-8107:scrJUQ059
attributes.tag: broker name
attributes.value: ArrayExpress
attributes.tag: common name
attributes.value: human
attributes.tag: developmental stage
attributes.value: adult
attributes.tag: disease
attributes.value: breast cancer
attributes.tag: individual
attributes.value: 55
attributes.tag: organism part
attributes.value: breast
attributes.tag: sample name
attributes.value: E-MTAB-8107:scrJUQ059
attributes.tag: sampling site
attributes.value: neoplasm
attributes.tag: scientific_name
attributes.value: Homo sapiens
attributes.tag: sex
attributes.value: female