title: bin.1_Syntrophobacteraceae
organism: uncultured Syntrophobacteraceae bacterium
description: Genomic bin isolated from a Sulfate-reducing LCFA-degrading enrichment culture.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2020-06-17T17:05:22Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-06-17T11:28:14Z
attributes.tag: External Id
attributes.value: SAMEA6968286
attributes.tag: INSDC center name
attributes.value: WAGENINGEN UNIVERSITY
attributes.tag: INSDC first public
attributes.value: 2020-06-17T17:05:22Z
attributes.tag: INSDC last update
attributes.value: 2020-06-17T11:28:14Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: bin.1_Syntrophobacteraceae
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes (v3.13.0)
attributes.tag: binning parameters
attributes.value: >MaxBin2, MetaBat2, Conconct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
attributes.tag: binning software
attributes.value: Metawrap v1.2
attributes.tag: collection date
attributes.value: 2013-12-01
attributes.tag: completeness score
attributes.value: 88.28
attributes.tag: completeness software
attributes.value: checkM
attributes.tag: contamination score
attributes.value: 3.87
attributes.tag: environment (biome)
attributes.value: Brewery wastewater treatment plant
attributes.tag: environment (feature)
attributes.value: Bioreactor
attributes.tag: environment (material)
attributes.value: anaerobic sludge
attributes.tag: geographic location (country and/or sea)
attributes.value: Portugal
attributes.tag: geographic location (latitude)
attributes.value: 1°12'50.8N
attributes.tag: geographic location (longitude)
attributes.value: 8°37'35.8W
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: Bioreactor anearobic sludge
attributes.tag: metagenomic source
attributes.value: wastewater metagenome
attributes.tag: project name
attributes.value: Sulfate-reducing LCFA-degrading enrichment culture
attributes.tag: sample derived from
attributes.value: ERS4366102
attributes.tag: sample name
attributes.value: bin.1_Syntrophobacteraceae
attributes.tag: scientific_name
attributes.value: uncultured Syntrophobacteraceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq