title: TEDDY OU Gut MAG
organism: Schaalia radingae
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1421445957: SRR7568051,SRR7566822,SRR7562085,SRR7568551,SRR7565048,SRR7567090,SRR7559980,SRR7562133,SRR7561761,SRR7563685,SRR7560075,SRR7566397,SRR7568015,SRR7560594,SRR7561291,SRR7564542,SRR7560721,SRR7557448,SRR7558448,SRR7559592,SRR7564922,SRR7562317,SRR7566285,SRR7558920,SRR7561995,SRR7557532,SRR7561160,SRR7565006,SRR7568252,SRR7563946,SRR7569983,SRR7558877,SRR7562796,SRR7565786,SRR7560015,SRR7567611,SRR7563401,SRR7558874,SRR7562337,SRR7558685
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:21:53Z
attributes.tag: External Id
attributes.value: SAMEA7434943
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:21:53Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1421445957_MAG63
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.90
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.18
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408447,SAMN09408590,SAMN09409084,SAMN09409103,SAMN09409212,SAMN09409505,SAMN09409560,SAMN09409866,SAMN09409881,SAMN09410111,SAMN09410834,SAMN09411097,SAMN09411606,SAMN09411651,SAMN09412506,SAMN09412617,SAMN09412643,SAMN09412673,SAMN09413494,SAMN09414150,SAMN09414581,SAMN09414608,SAMN09414674,SAMN09414683,SAMN09414762,SAMN09415082,SAMN09415610,SAMN09415861,SAMN09416098,SAMN09416229,SAMN09416365,SAMN09417891,SAMN09418261,SAMN09419004,SAMN09419155,SAMN09419220,SAMN09420195,SAMN09420630,SAMN09420910,SAMN09421073
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1421445957_MAG63
attributes.tag: scientific_name
attributes.value: Schaalia radingae
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach