title: TEDDY OU Gut MAG
organism: Coprobacillus cateniformis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1321430166: SRR7567722,SRR7557642,SRR7562359,SRR7566703,SRR7561321,SRR7566733,SRR7569509,SRR7568243,SRR7568187,SRR7562377,SRR7568900,SRR7565055,SRR7567396,SRR7563546,SRR7564167,SRR7569415,SRR7557284,SRR7569124,SRR7558399,SRR7564725,SRR7561773,SRR7568783,SRR7561087,SRR7561289,SRR7559204,SRR7559028,SRR7566883,SRR7559166,SRR7567114,SRR7561493,SRR7561870,SRR7564177,SRR7568277,SRR7562809,SRR7562446,SRR7568669,SRR7566074,SRR7557897,SRR7562784
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:37:01Z
attributes.tag: External Id
attributes.value: SAMEA7432115
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:37:01Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1321430166_MAG59
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 100
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408118,SAMN09408584,SAMN09409169,SAMN09409835,SAMN09409864,SAMN09410049,SAMN09410089,SAMN09410310,SAMN09410576,SAMN09410818,SAMN09411185,SAMN09411687,SAMN09412263,SAMN09412275,SAMN09413500,SAMN09413651,SAMN09413771,SAMN09414555,SAMN09414889,SAMN09415537,SAMN09415617,SAMN09416221,SAMN09416513,SAMN09416831,SAMN09416996,SAMN09417628,SAMN09417853,SAMN09418269,SAMN09418354,SAMN09418390,SAMN09418559,SAMN09418737,SAMN09418763,SAMN09419163,SAMN09419735,SAMN09420501,SAMN09420839,SAMN09420853,SAMN09421113
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1321430166_MAG59
attributes.tag: scientific_name
attributes.value: Coprobacillus cateniformis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach