title: TEDDY OU Gut MAG
organism: [Clostridium] leptum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1221481172: SRR7557958,SRR7558781,SRR7558967,SRR7567057,SRR7558615,SRR7566131,SRR7564746,SRR7556817,SRR7564332,SRR7566169,SRR7562815,SRR7564819,SRR7564121,SRR7567620,SRR7565603,SRR7559560,SRR7568581,SRR7562569,SRR7559758,SRR7560042,SRR7560043,SRR7561725,SRR7558230,SRR7567139,SRR7568907,SRR7565939,SRR7566414,SRR7565464,SRR7558898,SRR7557686,SRR7560545,SRR7565110,SRR7567730
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:56Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:57:21Z
attributes.tag: External Id
attributes.value: SAMEA7429354
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:56Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:57:21Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1221481172_MAG50
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.75
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408576,SAMN09408755,SAMN09408996,SAMN09409369,SAMN09409683,SAMN09409722,SAMN09410650,SAMN09410674,SAMN09411081,SAMN09411175,SAMN09411338,SAMN09411804,SAMN09413356,SAMN09413647,SAMN09414131,SAMN09414865,SAMN09415157,SAMN09415682,SAMN09415946,SAMN09416687,SAMN09416687,SAMN09417794,SAMN09417930,SAMN09418177,SAMN09418193,SAMN09420002,SAMN09420117,SAMN09420426,SAMN09420656,SAMN09420925,SAMN09420967,SAMN09421154,SAMN09421158
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1221481172_MAG50
attributes.tag: scientific_name
attributes.value: [Clostridium] leptum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach