title: TEDDY OU Gut MAG
organism: Romboutsia timonensis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1228642939: SRR7565925,SRR7567814,SRR7563835,SRR7564936,SRR7557587,SRR7557588,SRR7557556,SRR7562511,SRR7562510,SRR7557057,SRR7558645,SRR7564496,SRR7559331,SRR7561999,SRR7558285,SRR7557040,SRR7569933,SRR7562197
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:58:48Z
attributes.tag: External Id
attributes.value: SAMEA7429442
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:58:48Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1228642939_MAG32
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.79
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.02
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409772,SAMN09410950,SAMN09411213,SAMN09411358,SAMN09412051,SAMN09412051,SAMN09413141,SAMN09414006,SAMN09414006,SAMN09414740,SAMN09415877,SAMN09416723,SAMN09417545,SAMN09417741,SAMN09417871,SAMN09419044,SAMN09420025,SAMN09420846
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1228642939_MAG32
attributes.tag: scientific_name
attributes.value: Romboutsia timonensis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach