title: TEDDY OU Gut MAG
organism: Hungatella effluvii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1237890995: SRR7567120,SRR7567556,SRR7567280,SRR7560384,SRR7568199,SRR7561072,SRR7567281,SRR7567746,SRR7569499,SRR7568234,SRR7565279,SRR7563348,SRR7563662,SRR7566159,SRR7569337,SRR7558931,SRR7561610,SRR7560989,SRR7566123
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:03:44Z
attributes.tag: External Id
attributes.value: SAMEA7429718
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:03:44Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1237890995_MAG38
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.34
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 3.06
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408700,SAMN09409152,SAMN09410374,SAMN09410823,SAMN09413341,SAMN09413648,SAMN09413893,SAMN09414824,SAMN09414859,SAMN09415135,SAMN09415922,SAMN09418216,SAMN09418552,SAMN09418843,SAMN09418993,SAMN09419523,SAMN09419610,SAMN09420030,SAMN09420828
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1237890995_MAG38
attributes.tag: scientific_name
attributes.value: Hungatella effluvii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach