title: TEDDY OU Gut MAG
organism: uncultured Oscillospiraceae bacterium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1423526399: SRR7564555,SRR7558274,SRR7569545,SRR7567862,SRR7567347,SRR7567348,SRR7565891,SRR7563531,SRR7566755,SRR7562467,SRR7561977,SRR7556889,SRR7567545,SRR7567544,SRR7560469,SRR7556883,SRR7556882,SRR7564568,SRR7561631,SRR7569969,SRR7562099,SRR7562260,SRR7559086,SRR7564706,SRR7564945,SRR7560197,SRR7567835,SRR7557747,SRR7567088,SRR7563851,SRR7567507,SRR7562699,SRR7559951,SRR7565459,SRR7565458,SRR7567156,SRR7564019,SRR7561885,SRR7562816,SRR7562123,SRR7569659,SRR7564842,SRR7564176,SRR7560284,SRR7569719,SRR7562231
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: collection date
attributes.value: not provided
attributes.tag: sample derived from
attributes.value: SAMN09408406,SAMN09408706,SAMN09408775,SAMN09409584,SAMN09409871,SAMN09409871,SAMN09409959,SAMN09410109,SAMN09410949,SAMN09411032,SAMN09411349,SAMN09411387,SAMN09411437,SAMN09411437,SAMN09411893,SAMN09412242,SAMN09412242,SAMN09412556,SAMN09412993,SAMN09413155,SAMN09413334,SAMN09413336,SAMN09413424,SAMN09414436,SAMN09414454,SAMN09414572,SAMN09415107,SAMN09415189,SAMN09415454,SAMN09415999,SAMN09416123,SAMN09416464,SAMN09416676,SAMN09416836,SAMN09416836,SAMN09416882,SAMN09417063,SAMN09417284,SAMN09417746,SAMN09418563,SAMN09419247,SAMN09419669,SAMN09419991,SAMN09420029,SAMN09420109,SAMN09420348
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: host sex
attributes.value: male
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:24:15Z
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: organism
attributes.value: uncultured Ruminococcaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 96.64
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: scientific_name
attributes.value: uncultured Ruminococcaceae bacterium
attributes.tag: common name
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: isolation_source
attributes.value: human gut
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15