title: TEDDY OU Gut MAG
organism: Parabacteroides merdae
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1258854543: SRR7564409,SRR7566327,SRR7559110,SRR7564694,SRR7567841,SRR7568881,SRR7566216,SRR7565653,SRR7565118,SRR7564913,SRR7564266,SRR7564122,SRR7564803,SRR7567190,SRR7563107,SRR7565515,SRR7560111,SRR7557542,SRR7566345,SRR7557924,SRR7563701,SRR7567046,SRR7561234,SRR7569344,SRR7564712,SRR7567501,SRR7557669,SRR7557761,SRR7561015,SRR7569511,SRR7556916,SRR7566141
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:11:22Z
attributes.tag: External Id
attributes.value: SAMEA7430182
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:11:22Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1258854543_MAG4
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.72
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408304,SAMN09408984,SAMN09409052,SAMN09409620,SAMN09410689,SAMN09411713,SAMN09411852,SAMN09412214,SAMN09412424,SAMN09412602,SAMN09412686,SAMN09412933,SAMN09413015,SAMN09413051,SAMN09413133,SAMN09413360,SAMN09413762,SAMN09414349,SAMN09414808,SAMN09414886,SAMN09415065,SAMN09415882,SAMN09416496,SAMN09417189,SAMN09417776,SAMN09417953,SAMN09418434,SAMN09418479,SAMN09418605,SAMN09418800,SAMN09420034,SAMN09420355
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1258854543_MAG4
attributes.tag: scientific_name
attributes.value: Parabacteroides merdae
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach