title: TEDDY OU Gut MAG
organism: uncultured Clostridium sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1334414562: SRR7565844,SRR7569683,SRR7569682,SRR7559211,SRR7561760,SRR7568348,SRR7563751,SRR7563292,SRR7562306,SRR7562305,SRR7565742,SRR7565741,SRR7565801,SRR7566923,SRR7566924,SRR7563392,SRR7563393,SRR7565762,SRR7565573,SRR7565572,SRR7565008,SRR7565009,SRR7558559,SRR7567132,SRR7567133,SRR7568217,SRR7556901,SRR7556900,SRR7563895,SRR7564237,SRR7564236,SRR7562279,SRR7568262,SRR7565216
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:41:59Z
attributes.tag: External Id
attributes.value: SAMEA7432429
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:41:59Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1334414562_MAG10
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.82
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.63
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409832,SAMN09410138,SAMN09410138,SAMN09410496,SAMN09410801,SAMN09411112,SAMN09411647,SAMN09411832,SAMN09412020,SAMN09412020,SAMN09412441,SAMN09412441,SAMN09413152,SAMN09413448,SAMN09413448,SAMN09414271,SAMN09414271,SAMN09414667,SAMN09414864,SAMN09414864,SAMN09415967,SAMN09415967,SAMN09417154,SAMN09418018,SAMN09418018,SAMN09418493,SAMN09418657,SAMN09418657,SAMN09418878,SAMN09419238,SAMN09419238,SAMN09419810,SAMN09421014,SAMN09421115
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1334414562_MAG10
attributes.tag: scientific_name
attributes.value: uncultured Clostridium sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach