title: TEDDY OU Gut MAG
organism: Ruminococcus bromii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1264582496: SRR7557716,SRR7557380,SRR7567975,SRR7558326,SRR7560077,SRR7568055,SRR7560833,SRR7560626,SRR7562668,SRR7560520,SRR7565536,SRR7567901,SRR7558153,SRR7562849,SRR7560411,SRR7559658,SRR7561806,SRR7563481,SRR7558373,SRR7567185,SRR7569252,SRR7559765,SRR7562032,SRR7561998,SRR7562889,SRR7565159
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:15:13Z
attributes.tag: External Id
attributes.value: SAMEA7430414
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:15:13Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1264582496_MAG87
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.65
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.67
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408950,SAMN09409056,SAMN09409099,SAMN09409113,SAMN09409299,SAMN09409516,SAMN09409837,SAMN09410692,SAMN09411707,SAMN09411991,SAMN09413461,SAMN09413695,SAMN09414260,SAMN09414513,SAMN09416230,SAMN09416691,SAMN09416913,SAMN09417565,SAMN09417735,SAMN09418196,SAMN09418404,SAMN09418639,SAMN09419309,SAMN09420107,SAMN09420454,SAMN09420732
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1264582496_MAG87
attributes.tag: scientific_name
attributes.value: Ruminococcus bromii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach