title: Sample 3
organism: Solanum physalifolium
description: Leaves were collected before infection and at 24 and 48 hours after infection by P. infestans (isolate SE-03058). Samples were pooled for each species. Protocols: RNA was isolated by RNeasy Plant Mini Kit (Qiagen) Beads with oligo(dT) were used to isolate poly(A) mRNA. Fragmentation buffer was added for interrupting mRNA to short fragments. Taking these short fragments as templates, Random hexamerprimer were used to synthesize the first-strand cDNA. The second-strand cDNA was synthesized using buffer, dNTPs, RNase H and DNA polymerase I, respectively. Short fragments were purified with QiaQuick PCR extraction kit and resolved with EB buffer for end reparation and adding poly(A). After that, the short fragments were connected with sequencing adaptors. And, for amplification with PCR, we selected suitable fragments, as templates, with respect to the result of agarose gel electrophoresis.
attributes.tag: ENA first public
attributes.value: 2015-09-21
attributes.tag: ENA last update
attributes.value: 2014-09-23
attributes.tag: External Id
attributes.value: SAMEA2782816
attributes.tag: INSDC center alias
attributes.value: Swedish University of Agricultural Sciences, SLU
attributes.tag: INSDC center name
attributes.value: Swedish University of Agricultural Sciences, SLU
attributes.tag: INSDC first public
attributes.value: 2015-09-21T17:01:06Z
attributes.tag: INSDC last update
attributes.value: 2014-09-23T13:15:22Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: E-MTAB-2953:Sample 3
attributes.tag: broker name
attributes.value: ArrayExpress
attributes.tag: organism part
attributes.value: detached leaves
attributes.tag: sample name
attributes.value: E-MTAB-2953:Sample 3