title: TEDDY OU Gut MAG
organism: Streptococcus thermophilus
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1291970953: SRR7565740,SRR7569482,SRR7563992,SRR7565204,SRR7558280,SRR7559881,SRR7566434,SRR7567436,SRR7561502,SRR7557262,SRR7559179,SRR7569234,SRR7565260,SRR7560247,SRR7567531,SRR7568852,SRR7568485,SRR7561213,SRR7568006,SRR7556983,SRR7560854,SRR7559581,SRR7565977,SRR7563862
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:26:18Z
attributes.tag: External Id
attributes.value: SAMEA7431459
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:26:18Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1291970953_MAG97
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.86
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.04
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408356,SAMN09409183,SAMN09409214,SAMN09409381,SAMN09410828,SAMN09410848,SAMN09410961,SAMN09411660,SAMN09411762,SAMN09413481,SAMN09413639,SAMN09414709,SAMN09415164,SAMN09416603,SAMN09416683,SAMN09418430,SAMN09418500,SAMN09418995,SAMN09419112,SAMN09419496,SAMN09419790,SAMN09420567,SAMN09420759,SAMN09421004
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1291970953_MAG97
attributes.tag: scientific_name
attributes.value: Streptococcus thermophilus
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach