title: TEDDY OU Gut MAG
organism: uncultured Collinsella sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1257259793: SRR7559922,SRR7559923,SRR7559178,SRR7567457,SRR7560221,SRR7561489,SRR7559698,SRR7569832,SRR7564378,SRR7569288,SRR7569930,SRR7559311,SRR7559883,SRR7560866,SRR7565152,SRR7564228,SRR7567100
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:56Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:10:31Z
attributes.tag: External Id
attributes.value: SAMEA7430131
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:56Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:10:31Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1257259793_MAG18
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 100
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.81
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408043,SAMN09408043,SAMN09409439,SAMN09409801,SAMN09411371,SAMN09411572,SAMN09412832,SAMN09413638,SAMN09414262,SAMN09414293,SAMN09415313,SAMN09415465,SAMN09415831,SAMN09416157,SAMN09416176,SAMN09417836,SAMN09418496
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1257259793_MAG18
attributes.tag: scientific_name
attributes.value: uncultured Collinsella sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach