title: TEDDY OU Gut MAG
organism: Roseburia sp. AF12-17LB
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1354234152: SRR7564786,SRR7563767,SRR7560984,SRR7564628,SRR7557066,SRR7566825,SRR7556806,SRR7565545,SRR7568070,SRR7563093,SRR7563092,SRR7566818,SRR7562459,SRR7562964,SRR7558237,SRR7568788,SRR7556804,SRR7569782,SRR7562701,SRR7563943,SRR7558954,SRR7566436,SRR7558587,SRR7564670,SRR7567805,SRR7565221,SRR7564300,SRR7561218,SRR7569476,SRR7560988,SRR7557545
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:49:17Z
attributes.tag: External Id
attributes.value: SAMEA7432889
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:49:17Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1354234152_MAG48
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.88
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 2.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408033,SAMN09408057,SAMN09408546,SAMN09409192,SAMN09409851,SAMN09409947,SAMN09410336,SAMN09410676,SAMN09411071,SAMN09411233,SAMN09411233,SAMN09412593,SAMN09412654,SAMN09412853,SAMN09412926,SAMN09413018,SAMN09413212,SAMN09413476,SAMN09413580,SAMN09413915,SAMN09414204,SAMN09414672,SAMN09415286,SAMN09415476,SAMN09415859,SAMN09416051,SAMN09416344,SAMN09419025,SAMN09419060,SAMN09419860,SAMN09421104
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1354234152_MAG48
attributes.tag: scientific_name
attributes.value: Roseburia sp. AF12-17LB
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach