title: TEDDY OU Gut MAG
organism: Ruminococcus sp. CAG:254
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1442667678: SRR7564005,SRR7561862,SRR7562812,SRR7569023,SRR7563350,SRR7559615,SRR7566212,SRR7569597,SRR7568413,SRR7563139,SRR7559888,SRR7562412,SRR7567004,SRR7556995,SRR7561185,SRR7568567,SRR7569593,SRR7562195,SRR7566891,SRR7559039,SRR7558659,SRR7566452,SRR7562813,SRR7558261,SRR7564582,SRR7559796,SRR7560369,SRR7562915,SRR7559975,SRR7557785,SRR7564876,SRR7567258,SRR7557135
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:32:23Z
attributes.tag: External Id
attributes.value: SAMEA7435604
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:32:23Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1442667678_MAG20
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.51
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.45
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408045,SAMN09408810,SAMN09410270,SAMN09410458,SAMN09410520,SAMN09411092,SAMN09411377,SAMN09411934,SAMN09412123,SAMN09412766,SAMN09412849,SAMN09413050,SAMN09413276,SAMN09413354,SAMN09413410,SAMN09413833,SAMN09414323,SAMN09414357,SAMN09414372,SAMN09414605,SAMN09414850,SAMN09414918,SAMN09415150,SAMN09416150,SAMN09418252,SAMN09418266,SAMN09418339,SAMN09418629,SAMN09418849,SAMN09419234,SAMN09419315,SAMN09419581,SAMN09419612
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1442667678_MAG20
attributes.tag: scientific_name
attributes.value: Ruminococcus sp. CAG:254
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach