title: TEDDY OU Gut MAG
organism: bacterium LF-3
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1394456044: SRR7568556,SRR7569853,SRR7562762,SRR7560227,SRR7566565,SRR7563052,SRR7569125,SRR7561300,SRR7561906,SRR7567202,SRR7563522,SRR7557925,SRR7561095,SRR7564212,SRR7569916,SRR7563534,SRR7566579,SRR7568684,SRR7564570,SRR7566350,SRR7569156,SRR7563469,SRR7562555,SRR7569054,SRR7558037,SRR7558368,SRR7569763,SRR7557276
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:08:37Z
attributes.tag: External Id
attributes.value: SAMEA7434110
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:08:37Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1394456044_MAG52
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.28
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.94
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408078,SAMN09408483,SAMN09408588,SAMN09408862,SAMN09409463,SAMN09409492,SAMN09409787,SAMN09410133,SAMN09410326,SAMN09410548,SAMN09410579,SAMN09411277,SAMN09413204,SAMN09413239,SAMN09413911,SAMN09414410,SAMN09414520,SAMN09414880,SAMN09415084,SAMN09415168,SAMN09415272,SAMN09415574,SAMN09417214,SAMN09417501,SAMN09419231,SAMN09420075,SAMN09420790,SAMN09421106
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1394456044_MAG52
attributes.tag: scientific_name
attributes.value: bacterium LF-3
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach