title: TEDDY OU Gut MAG
organism: bacterium LF-3
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1365023894: SRR7562254,SRR7568410,SRR7567485,SRR7567484,SRR7557307,SRR7562673,SRR7567169,SRR7566299,SRR7561619,SRR7565315,SRR7565314,SRR7562041,SRR7568916,SRR7568917,SRR7558277,SRR7561791,SRR7565699,SRR7564896,SRR7565526,SRR7558009,SRR7557558,SRR7558529,SRR7558528
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:54:45Z
attributes.tag: External Id
attributes.value: SAMEA7433233
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:54:45Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1365023894_MAG50
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.28
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408215,SAMN09409316,SAMN09409740,SAMN09409740,SAMN09409978,SAMN09410913,SAMN09411778,SAMN09414074,SAMN09415416,SAMN09416028,SAMN09416028,SAMN09416053,SAMN09416912,SAMN09416912,SAMN09417172,SAMN09417777,SAMN09418357,SAMN09419063,SAMN09419124,SAMN09419551,SAMN09419654,SAMN09420898,SAMN09420898
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1365023894_MAG50
attributes.tag: scientific_name
attributes.value: bacterium LF-3
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach