title: TEDDY OU Gut MAG
organism: Segatella copri
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1214523904: SRR7559021,SRR7569147,SRR7564405,SRR7563549,SRR7563796,SRR7569615,SRR7566136,SRR7568592,SRR7568591,SRR7563986,SRR7569119,SRR7568755,SRR7562642,SRR7562641,SRR7562300,SRR7568434,SRR7562423,SRR7564549,SRR7557256,SRR7568232,SRR7560949,SRR7561829,SRR7565042,SRR7568046,SRR7559717,SRR7566398,SRR7566211,SRR7566036,SRR7567917,SRR7560211
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:52:32Z
attributes.tag: External Id
attributes.value: SAMEA7429060
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:52:32Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1214523904_MAG100
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.64
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.18
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408251,SAMN09408260,SAMN09409354,SAMN09409992,SAMN09410796,SAMN09411348,SAMN09411375,SAMN09411488,SAMN09411488,SAMN09411976,SAMN09412155,SAMN09413552,SAMN09413862,SAMN09413862,SAMN09415646,SAMN09416657,SAMN09416866,SAMN09417030,SAMN09417460,SAMN09417536,SAMN09417771,SAMN09418367,SAMN09418487,SAMN09418513,SAMN09418756,SAMN09418788,SAMN09418902,SAMN09419276,SAMN09420182,SAMN09421208
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1214523904_MAG100
attributes.tag: scientific_name
attributes.value: Prevotella copri
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach