title: TEDDY OU Gut MAG
organism: uncultured Collinsella sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1379633001: SRR7562489,SRR7566959,SRR7560759,SRR7559513,SRR7564589,SRR7567708,SRR7563648,SRR7558201,SRR7563406,SRR7561900,SRR7565326,SRR7560726,SRR7558569,SRR7558733,SRR7561943,SRR7558603,SRR7558602,SRR7567519,SRR7562387,SRR7567497,SRR7559361,SRR7568480,SRR7568481,SRR7559033
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:02:36Z
attributes.tag: External Id
attributes.value: SAMEA7433721
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:02:36Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1379633001_MAG5
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.08
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 3.23
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408768,SAMN09411095,SAMN09411505,SAMN09411754,SAMN09412075,SAMN09412089,SAMN09412144,SAMN09412997,SAMN09414089,SAMN09414364,SAMN09414947,SAMN09415470,SAMN09415535,SAMN09416869,SAMN09417031,SAMN09417137,SAMN09417137,SAMN09417182,SAMN09417268,SAMN09417351,SAMN09418936,SAMN09419868,SAMN09419868,SAMN09420391
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1379633001_MAG5
attributes.tag: scientific_name
attributes.value: uncultured Collinsella sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach