organism: human oral metagenome
attributes.tag: investigation_type
attributes.value: metagenome
attributes.tag: project_name
attributes.value: Hemoparo
attributes.tag: lat_lon
attributes.value: 48.119547 N 1.694538 W
attributes.tag: geo_loc_name
attributes.value: France:Brittany,Rennes
attributes.tag: collection_date
attributes.value: 2011-07-07
attributes.tag: env_biome
attributes.value: Homo sapiens
attributes.tag: host
attributes.value: Homo sapiens
attributes.tag: ethnicity
attributes.value: Caucasian
attributes.tag: env_feature
attributes.value: biofilm
attributes.tag: env_material
attributes.value: biofilm material
attributes.tag: env_package
attributes.value: human-oral
attributes.tag: samp_collect_device
attributes.value: sterile paper point
attributes.tag: lib_reads_seqd
attributes.value: 21835
attributes.tag: lib_const_meth
attributes.value: paired-end
attributes.tag: target_gene
attributes.value: 16S rRNA
attributes.tag: target_subfragment
attributes.value: V3V4
attributes.tag: pcr_primers
attributes.value: FWD:ACTCCTACGGGAGGCAGCAG REV:TACNVGGGTATCTAATCC
attributes.tag: pcr_cond
attributes.value: initial denaturation:98_0.5; annealing:45_0.5; elongation: 72_0.75; final elongation:72_10; 25
attributes.tag: seq_meth
attributes.value: Illumina MiSeq
attributes.tag: seq_quality_check
attributes.value: manually edited using PhiX
attributes.tag: assembly
attributes.value: Flash software;error rate of 1 in 100 bp;overlapping and merging read pairs
attributes.tag: samp_store_temp
attributes.value: -80
attributes.tag: host_subject_id
attributes.value: 83
attributes.tag: host_age
attributes.value: 51
attributes.tag: host_sex
attributes.value: female
attributes.tag: host_disease_stat
attributes.value: hemochromatosis type 1
attributes.tag: host_body_site
attributes.value: gingival groove
attributes.tag: host_height
attributes.value: N/A
attributes.tag: host_weight
attributes.value: N/A
attributes.tag: host_body_mass_index
attributes.value: N/A
attributes.tag: transferrin_saturation_percentage
attributes.value: 69.8
attributes.tag: serum_ferritin_micrograms_per_liter
attributes.value: 40
attributes.tag: periodontitis_classification_eke_2012
attributes.value: moderate
attributes.tag: mean_ppd
attributes.value: 2.12
attributes.tag: mean_cal
attributes.value: 2.35
attributes.tag: mean_bleeding_on_probing
attributes.value: 0.43
attributes.tag: mean_gingival_index
attributes.value: 0.21
attributes.tag: mean_plaque_index
attributes.value: 0.36
attributes.tag: number_of_teeth
attributes.value: 28
attributes.tag: sites_with_cal_greater_or_equal_3mm_percentage
attributes.value: 27.98
attributes.tag: sites_with_cal_greater_or_equal_5mm_percentage
attributes.value: 4.76
attributes.tag: sites_with_ppd_greater_or_equal_4mm_percentage
attributes.value: 2.98
attributes.tag: sites_with_ppd_greater_or_equal_6mm_percentage
attributes.value: 0
attributes.tag: BioSampleModel
attributes.value: MIMS.me
attributes.tag: BioSampleModel
attributes.value: MIGS/MIMS/MIMARKS.human-oral