title: TEDDY OU Gut MAG
organism: Veillonella seminalis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1298472532: SRR7569170,SRR7562277,SRR7566608,SRR7560850,SRR7566218,SRR7568109,SRR7564607,SRR7560766,SRR7557664,SRR7561678,SRR7565401,SRR7565347,SRR7565806,SRR7568447,SRR7559173,SRR7557011
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:30:26Z
attributes.tag: External Id
attributes.value: SAMEA7431709
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:30:26Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1298472532_MAG52
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 99.40
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408466,SAMN09409062,SAMN09409387,SAMN09411759,SAMN09412017,SAMN09413590,SAMN09413923,SAMN09414695,SAMN09414725,SAMN09415292,SAMN09415299,SAMN09416819,SAMN09417316,SAMN09418281,SAMN09419394,SAMN09420696
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1298472532_MAG52
attributes.tag: scientific_name
attributes.value: Veillonella seminalis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach