title: TEDDY OU Gut MAG
organism: uncultured Clostridium sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1289694717: SRR7568269,SRR7563526,SRR7566828,SRR7566829,SRR7563122,SRR7568501,SRR7568502,SRR7560496,SRR7560495,SRR7568938,SRR7557595,SRR7557596,SRR7558914,SRR7558756,SRR7558755,SRR7559007,SRR7562049,SRR7563025,SRR7563026,SRR7561059
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:25:02Z
attributes.tag: External Id
attributes.value: SAMEA7431026
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:25:02Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1289694717_MAG17
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 99.37
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.63
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409182,SAMN09409271,SAMN09410009,SAMN09410009,SAMN09410171,SAMN09410306,SAMN09410306,SAMN09411031,SAMN09411031,SAMN09411177,SAMN09412791,SAMN09412791,SAMN09414603,SAMN09416135,SAMN09416135,SAMN09417218,SAMN09417354,SAMN09419147,SAMN09419147,SAMN09419303
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1289694717_MAG17
attributes.tag: scientific_name
attributes.value: uncultured Clostridium sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach