title: TEDDY OU Gut MAG
organism: Parabacteroides distasonis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1282706628: SRR7557116,SRR7567981,SRR7558416,SRR7564707,SRR7559982,SRR7564886,SRR7561922,SRR7559822,SRR7570004,SRR7558269,SRR7558742,SRR7561887,SRR7567879,SRR7567880,SRR7558025,SRR7563119,SRR7566208,SRR7569341,SRR7564967,SRR7559746,SRR7564605,SRR7558239,SRR7562071,SRR7563042,SRR7564051,SRR7568007,SRR7566960
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:23:02Z
attributes.tag: External Id
attributes.value: SAMEA7430903
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:23:02Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1282706628_MAG117
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 92.39
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.38
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409129,SAMN09410222,SAMN09410568,SAMN09411527,SAMN09411929,SAMN09412083,SAMN09412590,SAMN09412732,SAMN09412959,SAMN09413098,SAMN09413183,SAMN09413338,SAMN09413868,SAMN09413868,SAMN09413917,SAMN09414247,SAMN09415198,SAMN09416030,SAMN09416295,SAMN09416783,SAMN09416920,SAMN09417071,SAMN09417956,SAMN09419299,SAMN09419821,SAMN09420230,SAMN09420765
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1282706628_MAG117
attributes.tag: scientific_name
attributes.value: Parabacteroides distasonis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach