title: TEDDY OU Gut MAG
organism: Mediterraneibacter gnavus
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1410223187: SRR7566205,SRR7568518,SRR7563963,SRR7565476,SRR7560374,SRR7567005,SRR7561252,SRR7561765,SRR7563779,SRR7558493,SRR7562512,SRR7566370,SRR7569226,SRR7560399,SRR7558077,SRR7567075,SRR7559480,SRR7567145,SRR7561154,SRR7566272,SRR7565964,SRR7569854,SRR7567564,SRR7560143,SRR7561179,SRR7566998,SRR7557884,SRR7558555,SRR7563675
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:15:28Z
attributes.tag: External Id
attributes.value: SAMEA7434547
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:15:28Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1410223187_MAG11
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.93
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409020,SAMN09409210,SAMN09409391,SAMN09410307,SAMN09410349,SAMN09410898,SAMN09411132,SAMN09411521,SAMN09411636,SAMN09411770,SAMN09412032,SAMN09412103,SAMN09412232,SAMN09413656,SAMN09413837,SAMN09414042,SAMN09414536,SAMN09414768,SAMN09415303,SAMN09416119,SAMN09416685,SAMN09416729,SAMN09417152,SAMN09417877,SAMN09418679,SAMN09418972,SAMN09419210,SAMN09419573,SAMN09419709
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1410223187_MAG11
attributes.tag: scientific_name
attributes.value: [Ruminococcus] gnavus
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach