title: TEDDY OU Gut MAG
organism: Ruthenibacterium lactatiformans
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1278763099: SRR7567316,SRR7563500,SRR7563501,SRR7562456,SRR7562455,SRR7569474,SRR7569475,SRR7563173,SRR7563174,SRR7562952,SRR7562953,SRR7568566,SRR7559455,SRR7559454,SRR7564029,SRR7567681,SRR7567680,SRR7566714,SRR7566713,SRR7567370,SRR7559031,SRR7567463,SRR7566909,SRR7566910,SRR7567770,SRR7563856,SRR7563855,SRR7557836,SRR7557835,SRR7569422,SRR7569421,SRR7568578,SRR7558213,SRR7559829,SRR7564154,SRR7567759,SRR7560068,SRR7563901,SRR7564422,SRR7564423,SRR7564872,SRR7564871,SRR7564903,SRR7569419,SRR7569420,SRR7564309,SRR7564310,SRR7561049
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:21:38Z
attributes.tag: External Id
attributes.value: SAMEA7430814
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:21:38Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1278763099_MAG58
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.88
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 2.95
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408168,SAMN09408520,SAMN09408520,SAMN09408638,SAMN09408638,SAMN09409488,SAMN09409488,SAMN09409710,SAMN09409710,SAMN09410035,SAMN09410035,SAMN09410564,SAMN09411426,SAMN09411426,SAMN09412536,SAMN09412690,SAMN09412690,SAMN09412749,SAMN09412749,SAMN09412865,SAMN09412990,SAMN09413181,SAMN09413351,SAMN09413351,SAMN09413375,SAMN09413944,SAMN09413944,SAMN09414243,SAMN09414243,SAMN09414770,SAMN09414770,SAMN09415319,SAMN09415484,SAMN09416129,SAMN09416317,SAMN09416897,SAMN09417481,SAMN09417600,SAMN09417980,SAMN09417980,SAMN09418516,SAMN09418516,SAMN09418831,SAMN09419729,SAMN09419729,SAMN09419864,SAMN09419864,SAMN09420219
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1278763099_MAG58
attributes.tag: scientific_name
attributes.value: Ruthenibacterium lactatiformans
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach