title: TEDDY OU Gut MAG
organism: Holdemanella biformis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1214325983: SRR7566673,SRR7563786,SRR7558951,SRR7564895,SRR7564894,SRR7566856,SRR7562342,SRR7563336,SRR7563337,SRR7569611,SRR7566989,SRR7562651,SRR7562652,SRR7561814,SRR7565661,SRR7568708,SRR7557858,SRR7563616,SRR7560356,SRR7560357,SRR7562078,SRR7568214,SRR7568213,SRR7561231,SRR7559174,SRR7559175,SRR7566970,SRR7561080,SRR7557332,SRR7557331,SRR7558070,SRR7558071
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:52:22Z
attributes.tag: External Id
attributes.value: SAMEA7429050
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:52:22Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1214325983_MAG63
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.82
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.65
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408250,SAMN09408847,SAMN09410364,SAMN09411318,SAMN09411318,SAMN09412247,SAMN09412350,SAMN09412883,SAMN09412883,SAMN09413101,SAMN09413581,SAMN09414033,SAMN09414033,SAMN09414172,SAMN09414225,SAMN09415234,SAMN09417021,SAMN09417308,SAMN09417547,SAMN09417547,SAMN09418284,SAMN09418680,SAMN09418680,SAMN09418938,SAMN09419050,SAMN09419050,SAMN09419123,SAMN09419582,SAMN09420490,SAMN09420490,SAMN09421060,SAMN09421060
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1214325983_MAG63
attributes.tag: scientific_name
attributes.value: Holdemanella biformis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach