title: TEDDY OU Gut MAG
organism: Mediterraneibacter torques
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1399174048: SRR7565171,SRR7559662,SRR7560405,SRR7560069,SRR7560982,SRR7560692,SRR7566439,SRR7561583,SRR7568206,SRR7556776,SRR7569425,SRR7567466,SRR7556820,SRR7563457,SRR7559445,SRR7564009,SRR7562044,SRR7558464,SRR7568052,SRR7560764,SRR7563256,SRR7566426,SRR7559997,SRR7559628,SRR7558567,SRR7561532,SRR7564692,SRR7568333,SRR7568696
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:10:36Z
attributes.tag: External Id
attributes.value: SAMEA7434238
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:10:36Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1399174048_MAG27
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.74
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.78
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408354,SAMN09408372,SAMN09408391,SAMN09408652,SAMN09408732,SAMN09409642,SAMN09410059,SAMN09410080,SAMN09410636,SAMN09411173,SAMN09411477,SAMN09411634,SAMN09411927,SAMN09411958,SAMN09412113,SAMN09412685,SAMN09412887,SAMN09415510,SAMN09415774,SAMN09416861,SAMN09417328,SAMN09417719,SAMN09418565,SAMN09418988,SAMN09419388,SAMN09420571,SAMN09420726,SAMN09421170,SAMN09421209
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1399174048_MAG27
attributes.tag: scientific_name
attributes.value: [Ruminococcus] torques
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach