title: TEDDY OU Gut MAG
organism: Alistipes putredinis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1211506076: SRR7563138,SRR7562557,SRR7568454,SRR7565870,SRR7563014,SRR7567890,SRR7559212,SRR7568936,SRR7566867,SRR7558680,SRR7568147,SRR7567030,SRR7565339,SRR7568190,SRR7559859,SRR7564943,SRR7563914,SRR7565391,SRR7557633
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:50:23Z
attributes.tag: External Id
attributes.value: SAMEA7428929
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:50:23Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1211506076_MAG35
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.84
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.96
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408014,SAMN09408146,SAMN09408167,SAMN09408457,SAMN09409016,SAMN09409571,SAMN09410005,SAMN09410203,SAMN09411192,SAMN09411269,SAMN09413291,SAMN09414766,SAMN09415555,SAMN09415589,SAMN09416406,SAMN09416864,SAMN09417178,SAMN09418571,SAMN09419986
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1211506076_MAG35
attributes.tag: scientific_name
attributes.value: Alistipes putredinis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach