title: TEDDY OU Gut MAG
organism: Holdemania filiformis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1376756011: SRR7557247,SRR7563815,SRR7558385,SRR7569718,SRR7560525,SRR7558862,SRR7562026,SRR7557000,SRR7561934,SRR7558012,SRR7567845,SRR7557328,SRR7559820,SRR7564602,SRR7564742,SRR7569646,SRR7562776,SRR7566280,SRR7557313,SRR7564222
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:00:01Z
attributes.tag: External Id
attributes.value: SAMEA7433554
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:00:01Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1376756011_MAG23
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.10
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.27
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09410793,SAMN09410885,SAMN09411436,SAMN09412048,SAMN09412349,SAMN09412504,SAMN09412916,SAMN09413156,SAMN09413449,SAMN09414593,SAMN09415300,SAMN09416405,SAMN09416661,SAMN09417355,SAMN09417602,SAMN09418325,SAMN09418427,SAMN09419099,SAMN09420397,SAMN09420683
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1376756011_MAG23
attributes.tag: scientific_name
attributes.value: Holdemania filiformis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach