title: TEDDY OU Gut MAG
organism: Bacteroides caccae
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1361733906: SRR7563832,SRR7559764,SRR7567270,SRR7559233,SRR7559234,SRR7563442,SRR7559821,SRR7559925,SRR7565027,SRR7566163,SRR7560264,SRR7560265,SRR7563340,SRR7563339,SRR7558143,SRR7562842,SRR7562843,SRR7568428,SRR7568427,SRR7568028,SRR7562788,SRR7562640,SRR7562386,SRR7559047,SRR7559046,SRR7562912,SRR7563908,SRR7563909,SRR7560951,SRR7564519,SRR7563990,SRR7561690,SRR7561689,SRR7564113,SRR7567595,SRR7565259,SRR7565258,SRR7556978,SRR7561827,SRR7569502,SRR7569503,SRR7565651,SRR7560841,SRR7560842,SRR7561949,SRR7561948,SRR7556874,SRR7556873,SRR7558383,SRR7562921,SRR7567135,SRR7561206,SRR7569491,SRR7567035,SRR7567674
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:54:09Z
attributes.tag: External Id
attributes.value: SAMEA7433194
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:54:09Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1361733906_MAG96
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.81
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.56
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408103,SAMN09408227,SAMN09408517,SAMN09408738,SAMN09408738,SAMN09408973,SAMN09409208,SAMN09409804,SAMN09409845,SAMN09410086,SAMN09410265,SAMN09410265,SAMN09410926,SAMN09410926,SAMN09411585,SAMN09411865,SAMN09411865,SAMN09413438,SAMN09413438,SAMN09413694,SAMN09414218,SAMN09414367,SAMN09414477,SAMN09414517,SAMN09414517,SAMN09415130,SAMN09415172,SAMN09415172,SAMN09415212,SAMN09415741,SAMN09415786,SAMN09415809,SAMN09415809,SAMN09416104,SAMN09416708,SAMN09416725,SAMN09416725,SAMN09416991,SAMN09417466,SAMN09417540,SAMN09417540,SAMN09418320,SAMN09418474,SAMN09418474,SAMN09418553,SAMN09418553,SAMN09418707,SAMN09418707,SAMN09419554,SAMN09419664,SAMN09419749,SAMN09420111,SAMN09420366,SAMN09420564,SAMN09420987
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1361733906_MAG96
attributes.tag: scientific_name
attributes.value: Bacteroides caccae
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach