title: TEDDY OU Gut MAG
organism: Bifidobacterium adolescentis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1402733862: SRR7559924,SRR7568202,SRR7558102,SRR7558377,SRR7568967,SRR7564140,SRR7561240,SRR7557873,SRR7564272,SRR7559118,SRR7565900,SRR7557165,SRR7559439,SRR7559487,SRR7560459,SRR7561694,SRR7557204,SRR7561673,SRR7559188,SRR7566334
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:12:32Z
attributes.tag: External Id
attributes.value: SAMEA7434362
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:12:32Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1402733862_MAG103
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 90.38
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.06
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408786,SAMN09409255,SAMN09409474,SAMN09409603,SAMN09409716,SAMN09411531,SAMN09412132,SAMN09412687,SAMN09413024,SAMN09414460,SAMN09414810,SAMN09417434,SAMN09417564,SAMN09417950,SAMN09418194,SAMN09418486,SAMN09418734,SAMN09419107,SAMN09419278,SAMN09419878
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1402733862_MAG103
attributes.tag: scientific_name
attributes.value: Bifidobacterium adolescentis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach