title: TEDDY OU Gut MAG
organism: Roseburia hominis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1342982140: SRR7567291,SRR7558322,SRR7558321,SRR7559230,SRR7569551,SRR7565276,SRR7565509,SRR7558805,SRR7563658,SRR7569055,SRR7563031,SRR7557166,SRR7564036,SRR7568711,SRR7558310,SRR7562595,SRR7558840,SRR7565709,SRR7559443,SRR7564959,SRR7566522,SRR7559453,SRR7557412,SRR7562189,SRR7562760,SRR7559643,SRR7558987,SRR7569345,SRR7566836,SRR7560400,SRR7560314,SRR7566041,SRR7569094,SRR7560201,SRR7559054,SRR7566667
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:45:34Z
attributes.tag: External Id
attributes.value: SAMEA7432656
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:45:34Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1342982140_MAG60
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.47
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.40
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408496,SAMN09408751,SAMN09408751,SAMN09409383,SAMN09409916,SAMN09410600,SAMN09410660,SAMN09410829,SAMN09411339,SAMN09411508,SAMN09413028,SAMN09413175,SAMN09413286,SAMN09413816,SAMN09414049,SAMN09414558,SAMN09414801,SAMN09415209,SAMN09415511,SAMN09415752,SAMN09415810,SAMN09415883,SAMN09416094,SAMN09417184,SAMN09417256,SAMN09417413,SAMN09417598,SAMN09417961,SAMN09418580,SAMN09418614,SAMN09419469,SAMN09419949,SAMN09420243,SAMN09420388,SAMN09420821,SAMN09421081
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1342982140_MAG60
attributes.tag: scientific_name
attributes.value: Roseburia hominis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach