title: TEDDY OU Gut MAG
organism: uncultured Collinsella sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1283384554: SRR7564873,SRR7557311,SRR7558211,SRR7558212,SRR7562472,SRR7562473,SRR7563565,SRR7557771,SRR7562028,SRR7564997,SRR7564998,SRR7566530,SRR7563817,SRR7561437,SRR7566893,SRR7568280,SRR7568804,SRR7569287,SRR7559061,SRR7568956,SRR7568740,SRR7566633,SRR7566634
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:24:02Z
attributes.tag: External Id
attributes.value: SAMEA7430963
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:24:02Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1283384554_MAG55
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 99.19
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.81
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408023,SAMN09409258,SAMN09409405,SAMN09409405,SAMN09410358,SAMN09410358,SAMN09411381,SAMN09413000,SAMN09413043,SAMN09413259,SAMN09413259,SAMN09413488,SAMN09414422,SAMN09414692,SAMN09415827,SAMN09416610,SAMN09417467,SAMN09417694,SAMN09419007,SAMN09419175,SAMN09420784,SAMN09420902,SAMN09420902
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1283384554_MAG55
attributes.tag: scientific_name
attributes.value: uncultured Collinsella sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach