title: TEDDY OU Gut MAG
organism: Alistipes onderdonkii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1422646563: SRR7562855,SRR7564837,SRR7567794,SRR7567922,SRR7558978,SRR7565781,SRR7568299,SRR7562090,SRR7558908,SRR7559518,SRR7569418,SRR7564777,SRR7560693,SRR7569011,SRR7563081,SRR7557946,SRR7566405,SRR7562639,SRR7561813,SRR7560543,SRR7561556,SRR7563985,SRR7568024,SRR7558078,SRR7563263,SRR7560679,SRR7567717,SRR7562103,SRR7557342,SRR7561820,SRR7560675,SRR7557216,SRR7565510,SRR7565172,SRR7558474,SRR7566168,SRR7557985,SRR7567977,SRR7561568,SRR7563991,SRR7559355
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:23:19Z
attributes.tag: External Id
attributes.value: SAMEA7435034
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:23:19Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1422646563_MAG93
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.98
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.68
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408951,SAMN09408958,SAMN09409752,SAMN09409839,SAMN09409919,SAMN09410272,SAMN09410378,SAMN09410487,SAMN09410933,SAMN09411270,SAMN09411360,SAMN09411464,SAMN09411541,SAMN09412429,SAMN09412485,SAMN09412565,SAMN09412919,SAMN09413668,SAMN09413936,SAMN09413981,SAMN09414392,SAMN09414828,SAMN09415141,SAMN09415251,SAMN09415269,SAMN09415569,SAMN09416180,SAMN09416749,SAMN09417381,SAMN09417553,SAMN09417791,SAMN09417844,SAMN09418398,SAMN09418904,SAMN09419036,SAMN09419176,SAMN09419367,SAMN09419861,SAMN09419989,SAMN09420310,SAMN09420607
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1422646563_MAG93
attributes.tag: scientific_name
attributes.value: Alistipes onderdonkii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach