title: TEDDY OU Gut MAG
organism: Mediterraneibacter torques
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1232962451: SRR7560437,SRR7557810,SRR7567469,SRR7567782,SRR7569703,SRR7560214,SRR7557789,SRR7569822,SRR7560215,SRR7558917,SRR7566010,SRR7563897,SRR7568267,SRR7557348,SRR7558231,SRR7569447,SRR7558478,SRR7562752,SRR7560390,SRR7561202,SRR7568144,SRR7560375,SRR7565012,SRR7562233,SRR7563620,SRR7564721,SRR7563921,SRR7567360,SRR7557423,SRR7566094,SRR7566223
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:01:41Z
attributes.tag: External Id
attributes.value: SAMEA7429600
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:01:41Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1232962451_MAG69
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 99.16
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.58
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408478,SAMN09408541,SAMN09409667,SAMN09409745,SAMN09410539,SAMN09410601,SAMN09410606,SAMN09411060,SAMN09411257,SAMN09411540,SAMN09412785,SAMN09413450,SAMN09413942,SAMN09414137,SAMN09414490,SAMN09415370,SAMN09415497,SAMN09415911,SAMN09416315,SAMN09416701,SAMN09416773,SAMN09417709,SAMN09417838,SAMN09417986,SAMN09419043,SAMN09419174,SAMN09420113,SAMN09420705,SAMN09420734,SAMN09421161,SAMN09421177
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1232962451_MAG69
attributes.tag: scientific_name
attributes.value: [Ruminococcus] torques
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach