title: TEDDY OU Gut MAG
organism: Lactobacillus crispatus
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1211029509: SRR7557621,SRR7568250,SRR7558244,SRR7558245,SRR7567353,SRR7559125,SRR7566207,SRR7569383,SRR7566158,SRR7558933,SRR7569645,SRR7568773,SRR7565831,SRR7559070,SRR7565675,SRR7558960,SRR7563884,SRR7562623,SRR7568637,SRR7568035,SRR7562327,SRR7560587,SRR7561414,SRR7563698,SRR7564615,SRR7557153,SRR7564655,SRR7566516,SRR7567563,SRR7563271,SRR7560540,SRR7562453,SRR7564523
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:49:47Z
attributes.tag: External Id
attributes.value: SAMEA7428892
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:49:47Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1211029509_MAG4
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.23
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.65
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408022,SAMN09408440,SAMN09408864,SAMN09408864,SAMN09409075,SAMN09409132,SAMN09409321,SAMN09409891,SAMN09409962,SAMN09410037,SAMN09410866,SAMN09411509,SAMN09412619,SAMN09412695,SAMN09412936,SAMN09412943,SAMN09413008,SAMN09414497,SAMN09415601,SAMN09415618,SAMN09415703,SAMN09416324,SAMN09416692,SAMN09416733,SAMN09417680,SAMN09417788,SAMN09418418,SAMN09419460,SAMN09419579,SAMN09420459,SAMN09420475,SAMN09420561,SAMN09420817
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1211029509_MAG4
attributes.tag: scientific_name
attributes.value: Lactobacillus crispatus
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach