title: TEDDY OU Gut MAG
organism: Thomasclavelia ramosa
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1233265603: SRR7569198,SRR7561290,SRR7566377,SRR7565711,SRR7564032,SRR7559534,SRR7563714,SRR7558060,SRR7566824,SRR7569759,SRR7562089,SRR7561403,SRR7564057,SRR7563695,SRR7569628,SRR7561513,SRR7559568,SRR7559462,SRR7563814,SRR7568986,SRR7568381,SRR7562505,SRR7563929
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:01:57Z
attributes.tag: External Id
attributes.value: SAMEA7429615
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:01:57Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1233265603_MAG20
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 100
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408323,SAMN09409333,SAMN09409353,SAMN09409476,SAMN09409707,SAMN09411131,SAMN09413049,SAMN09413104,SAMN09414096,SAMN09414763,SAMN09415037,SAMN09416126,SAMN09416208,SAMN09416976,SAMN09417223,SAMN09417637,SAMN09418489,SAMN09418708,SAMN09419355,SAMN09420042,SAMN09420486,SAMN09420815,SAMN09421181
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1233265603_MAG20
attributes.tag: scientific_name
attributes.value: Erysipelatoclostridium ramosum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach