title: TEDDY OU Gut MAG
organism: Bacteroides caccae
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1307390055: SRR7559463,SRR7565918,SRR7561294,SRR7567614,SRR7566789,SRR7560338,SRR7567971,SRR7568087,SRR7562074,SRR7565889,SRR7560318,SRR7562355,SRR7569677,SRR7568210,SRR7559605,SRR7557780,SRR7561136,SRR7568491,SRR7566949,SRR7569327,SRR7557565,SRR7558172,SRR7559288,SRR7561499
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:33:21Z
attributes.tag: External Id
attributes.value: SAMEA7431887
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:33:21Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1307390055_MAG58
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.70
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.64
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408191,SAMN09408200,SAMN09408510,SAMN09408724,SAMN09409546,SAMN09410595,SAMN09410638,SAMN09411238,SAMN09411718,SAMN09412669,SAMN09413392,SAMN09414417,SAMN09414928,SAMN09415577,SAMN09416629,SAMN09416764,SAMN09416771,SAMN09417688,SAMN09417976,SAMN09418299,SAMN09418730,SAMN09418743,SAMN09420063,SAMN09420148
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1307390055_MAG58
attributes.tag: scientific_name
attributes.value: Bacteroides caccae
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach