title: TEDDY OU Gut MAG
organism: [Clostridium] innocuum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1287560689: SRR7560076,SRR7568683,SRR7560889,SRR7566827,SRR7559613,SRR7569625,SRR7569375,SRR7557228,SRR7562865,SRR7559468,SRR7561404,SRR7561531,SRR7557751,SRR7561364,SRR7569855,SRR7568126,SRR7561796,SRR7556987,SRR7562046,SRR7562274,SRR7566005,SRR7567366,SRR7565508,SRR7566282
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:24:27Z
attributes.tag: External Id
attributes.value: SAMEA7430989
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:24:27Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1287560689_MAG11
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.28
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408435,SAMN09409266,SAMN09409679,SAMN09410134,SAMN09410853,SAMN09410930,SAMN09411512,SAMN09411672,SAMN09411782,SAMN09411973,SAMN09412011,SAMN09412094,SAMN09412190,SAMN09412596,SAMN09412606,SAMN09413766,SAMN09414901,SAMN09415897,SAMN09415965,SAMN09417597,SAMN09418583,SAMN09418984,SAMN09419638,SAMN09420059
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1287560689_MAG11
attributes.tag: scientific_name
attributes.value: [Clostridium] innocuum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach