title: TEDDY OU Gut MAG
organism: Holdemania filiformis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1320820418: SRR7561815,SRR7558999,SRR7564027,SRR7566236,SRR7566237,SRR7562749,SRR7566576,SRR7561189,SRR7563720,SRR7559898,SRR7557351,SRR7557350,SRR7568805,SRR7557004,SRR7567745,SRR7565839,SRR7559561,SRR7561707,SRR7561706,SRR7566077,SRR7562385,SRR7568752,SRR7568753,SRR7567972,SRR7567973,SRR7559694,SRR7566059,SRR7561272,SRR7561485,SRR7561016,SRR7562576,SRR7558816,SRR7566663,SRR7557554,SRR7557555,SRR7557553,SRR7568692,SRR7568693,SRR7568694,SRR7564393,SRR7562946,SRR7560892,SRR7560893,SRR7569391,SRR7562255,SRR7568326,SRR7568264,SRR7568265,SRR7564934,SRR7564933,SRR7559097,SRR7564757,SRR7559397,SRR7559398,SRR7564071,SRR7564072,SRR7561020,SRR7561021,SRR7558116
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:35:47Z
attributes.tag: External Id
attributes.value: SAMEA7432038
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:35:47Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1320820418_MAG20
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.14
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.27
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408369,SAMN09408995,SAMN09409754,SAMN09409883,SAMN09409883,SAMN09409933,SAMN09410562,SAMN09411005,SAMN09411344,SAMN09411522,SAMN09411699,SAMN09411699,SAMN09411715,SAMN09411826,SAMN09412100,SAMN09412163,SAMN09412202,SAMN09412212,SAMN09412212,SAMN09412499,SAMN09412510,SAMN09412915,SAMN09412915,SAMN09413531,SAMN09413531,SAMN09414102,SAMN09414414,SAMN09414434,SAMN09414931,SAMN09415165,SAMN09415517,SAMN09415779,SAMN09416822,SAMN09417075,SAMN09417075,SAMN09417075,SAMN09417647,SAMN09417647,SAMN09417647,SAMN09417799,SAMN09418577,SAMN09418762,SAMN09418762,SAMN09419116,SAMN09419348,SAMN09419350,SAMN09419895,SAMN09419895,SAMN09419940,SAMN09419940,SAMN09419953,SAMN09420227,SAMN09420989,SAMN09420989,SAMN09421029,SAMN09421029,SAMN09421085,SAMN09421085,SAMN09421200
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1320820418_MAG20
attributes.tag: scientific_name
attributes.value: Holdemania filiformis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach