title: TEDDY OU Gut MAG
organism: Ruminococcus bicirculans (ex Wegman et al. 2014)
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1401905929: SRR7565074,SRR7562550,SRR7561022,SRR7562179,SRR7556839,SRR7557133,SRR7561362,SRR7560514,SRR7561877,SRR7557762,SRR7558670,SRR7565011,SRR7565697,SRR7567769,SRR7558308,SRR7568955,SRR7558471,SRR7563374,SRR7561260,SRR7561259,SRR7565478,SRR7558845,SRR7568360,SRR7563428,SRR7562666,SRR7568458,SRR7563528,SRR7558291,SRR7558292,SRR7558563,SRR7565254,SRR7568330,SRR7564038,SRR7558329,SRR7557438,SRR7557177,SRR7562076,SRR7565099,SRR7565405,SRR7565406,SRR7566682,SRR7568289,SRR7565513,SRR7569557,SRR7562963,SRR7567935,SRR7558217,SRR7562259
attributes.tag: ENA first public
attributes.value: 2021-01-30
attributes.tag: ENA last update
attributes.value: 2020-10-15
attributes.tag: External Id
attributes.value: SAMEA7434348
attributes.tag: INSDC center alias
attributes.value: Pan Lab at OU
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:12:19Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1401905929_MAG67
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.63
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408220,SAMN09408290,SAMN09408564,SAMN09409161,SAMN09409819,SAMN09410188,SAMN09410316,SAMN09410340,SAMN09410751,SAMN09410774,SAMN09411050,SAMN09411096,SAMN09411373,SAMN09411604,SAMN09411744,SAMN09411853,SAMN09412697,SAMN09412764,SAMN09412816,SAMN09412816,SAMN09413408,SAMN09413650,SAMN09414527,SAMN09414822,SAMN09414987,SAMN09415447,SAMN09415653,SAMN09416026,SAMN09416026,SAMN09416917,SAMN09416918,SAMN09417370,SAMN09417975,SAMN09418214,SAMN09418318,SAMN09418334,SAMN09418521,SAMN09418660,SAMN09418915,SAMN09418915,SAMN09419546,SAMN09419793,SAMN09419927,SAMN09419930,SAMN09419981,SAMN09420868,SAMN09421062,SAMN09421180
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1401905929_MAG67
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach