title: TEDDY OU Gut MAG
organism: Clostridium sp. CAG:964
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1210048067: SRR7563310,SRR7562570,SRR7562535,SRR7567246,SRR7563206,SRR7568000,SRR7566030,SRR7561782,SRR7566987,SRR7566986,SRR7567215,SRR7562659,SRR7567453,SRR7565237,SRR7557635,SRR7566534,SRR7557967,SRR7558929,SRR7563839,SRR7562220,SRR7569243,SRR7564340,SRR7560442,SRR7561343,SRR7560454,SRR7560453,SRR7568739,SRR7567793
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:49:01Z
attributes.tag: External Id
attributes.value: SAMEA7428847
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:49:01Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1210048067_MAG39
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.42
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408181,SAMN09409185,SAMN09409541,SAMN09409788,SAMN09410408,SAMN09410452,SAMN09410763,SAMN09411945,SAMN09411961,SAMN09411961,SAMN09413776,SAMN09414073,SAMN09414898,SAMN09415079,SAMN09415230,SAMN09415266,SAMN09416428,SAMN09416931,SAMN09417173,SAMN09417245,SAMN09418308,SAMN09418345,SAMN09418539,SAMN09419153,SAMN09419918,SAMN09419918,SAMN09419970,SAMN09421093
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1210048067_MAG39
attributes.tag: scientific_name
attributes.value: Clostridium sp. CAG:964
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach