title: TEDDY OU Gut MAG
organism: Limosilactobacillus reuteri
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1231759300: SRR7569333,SRR7565800,SRR7565799,SRR7563164,SRR7563165,SRR7564890,SRR7558532,SRR7561269,SRR7563242,SRR7559405,SRR7569639,SRR7569640,SRR7559687,SRR7568488,SRR7559612,SRR7560915,SRR7565524,SRR7560560,SRR7557838,SRR7557837,SRR7569486,SRR7568322
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:00:59Z
attributes.tag: External Id
attributes.value: SAMEA7429565
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:57Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:00:59Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1231759300_MAG87
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.51
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408105,SAMN09409704,SAMN09409704,SAMN09411553,SAMN09411553,SAMN09412301,SAMN09413313,SAMN09413722,SAMN09413987,SAMN09414360,SAMN09414606,SAMN09414606,SAMN09415706,SAMN09416373,SAMN09416778,SAMN09417104,SAMN09417947,SAMN09418706,SAMN09418991,SAMN09418991,SAMN09420367,SAMN09420706
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1231759300_MAG87
attributes.tag: scientific_name
attributes.value: Lactobacillus reuteri
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach