title: TEDDY OU Gut MAG
organism: uncultured Ruminococcus sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1377560498: SRR7566622,SRR7562903,SRR7564348,SRR7562573,SRR7562695,SRR7567698,SRR7561947,SRR7563281,SRR7566081,SRR7566303,SRR7569392,SRR7559802,SRR7556912,SRR7569227,SRR7560034,SRR7565480,SRR7568494,SRR7566004,SRR7562696,SRR7561944,SRR7561612,SRR7559610
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:01:10Z
attributes.tag: External Id
attributes.value: SAMEA7433628
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:01:10Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1377560498_MAG49
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.65
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.67
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409276,SAMN09409389,SAMN09409514,SAMN09409828,SAMN09410043,SAMN09410092,SAMN09410910,SAMN09411105,SAMN09411114,SAMN09412312,SAMN09413036,SAMN09413304,SAMN09413812,SAMN09414790,SAMN09415089,SAMN09415435,SAMN09416678,SAMN09416780,SAMN09417624,SAMN09418484,SAMN09419621,SAMN09419823
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1377560498_MAG49
attributes.tag: scientific_name
attributes.value: uncultured Ruminococcus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach