title: TEDDY OU Gut MAG
organism: Bifidobacterium pseudocatenulatum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1369453575: SRR7558256,SRR7556840,SRR7560712,SRR7557162,SRR7559986,SRR7567343,SRR7556830,SRR7563510,SRR7559120,SRR7566339,SRR7564401,SRR7557049,SRR7564436,SRR7564476,SRR7567203,SRR7567129,SRR7566858,SRR7569469,SRR7566338,SRR7557801,SRR7566415,SRR7569132,SRR7560118,SRR7558042,SRR7558455,SRR7562876,SRR7560360
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:56:51Z
attributes.tag: External Id
attributes.value: SAMEA7433358
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:56:51Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1369453575_MAG14
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.64
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.76
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09410417,SAMN09410908,SAMN09411251,SAMN09411582,SAMN09411846,SAMN09412012,SAMN09412052,SAMN09412064,SAMN09412671,SAMN09413545,SAMN09413924,SAMN09414658,SAMN09416146,SAMN09416304,SAMN09416338,SAMN09416340,SAMN09416980,SAMN09417261,SAMN09418233,SAMN09418752,SAMN09418771,SAMN09419292,SAMN09419640,SAMN09419741,SAMN09419786,SAMN09420871,SAMN09421122
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1369453575_MAG14
attributes.tag: scientific_name
attributes.value: Bifidobacterium pseudocatenulatum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach