title: TEDDY OU Gut MAG
organism: uncultured Oscillospiraceae bacterium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1390958443: SRR7566484,SRR7566483,SRR7559165,SRR7568540,SRR7558516,SRR7567723,SRR7569740,SRR7568468,SRR7559906,SRR7560014,SRR7565013,SRR7563519,SRR7558186,SRR7559877,SRR7563412,SRR7570010,SRR7569560,SRR7557181,SRR7560904,SRR7565053,SRR7560847,SRR7563462,SRR7566433,SRR7563448,SRR7558084,SRR7568644,SRR7561415,SRR7568079,SRR7556870,SRR7556871,SRR7563688,SRR7557983,SRR7567537,SRR7561371,SRR7566791,SRR7565454,SRR7562549,SRR7557196,SRR7567557
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: collection date
attributes.value: not provided
attributes.tag: sample derived from
attributes.value: SAMN09408178,SAMN09408178,SAMN09408216,SAMN09408312,SAMN09408437,SAMN09408648,SAMN09408695,SAMN09409115,SAMN09409138,SAMN09409582,SAMN09409775,SAMN09410377,SAMN09410575,SAMN09410764,SAMN09410786,SAMN09411465,SAMN09411693,SAMN09411904,SAMN09411985,SAMN09412035,SAMN09412788,SAMN09413624,SAMN09413875,SAMN09414843,SAMN09415414,SAMN09415588,SAMN09416111,SAMN09416376,SAMN09416580,SAMN09416580,SAMN09417500,SAMN09417607,SAMN09418285,SAMN09418449,SAMN09419031,SAMN09419088,SAMN09419198,SAMN09420332,SAMN09420725
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: host sex
attributes.value: female
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:03Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:05:56Z
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: organism
attributes.value: uncultured Ruminococcaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 97.32
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: scientific_name
attributes.value: uncultured Ruminococcaceae bacterium
attributes.tag: common name
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: isolation_source
attributes.value: human gut
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15