title: TEDDY OU Gut MAG
organism: Oscillospiraceae bacterium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1262137252: SRR7567277,SRR7567037,SRR7569570,SRR7564063,SRR7559502,SRR7557224,SRR7569951,SRR7566277,SRR7566481,SRR7558300,SRR7558118,SRR7564864,SRR7557526,SRR7567600,SRR7562326,SRR7563251,SRR7559281,SRR7562779,SRR7569367,SRR7564825,SRR7557416,SRR7569644,SRR7566723,SRR7567502,SRR7565244
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: collection date
attributes.value: not provided
attributes.tag: sample derived from
attributes.value: SAMN09409330,SAMN09409364,SAMN09410062,SAMN09410840,SAMN09411161,SAMN09412110,SAMN09412240,SAMN09412299,SAMN09412594,SAMN09413025,SAMN09413615,SAMN09414375,SAMN09414646,SAMN09414756,SAMN09414884,SAMN09415326,SAMN09415860,SAMN09415915,SAMN09416124,SAMN09416172,SAMN09416375,SAMN09416922,SAMN09417373,SAMN09418689,SAMN09420431
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: contamination score
attributes.value: 3.75
attributes.tag: host sex
attributes.value: female
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:13:18Z
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: organism
attributes.value: Ruminococcaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 98.26
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: scientific_name
attributes.value: Ruminococcaceae bacterium
attributes.tag: common name
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: isolation_source
attributes.value: human gut
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15