title: TEDDY OU Gut MAG
organism: uncultured Oscillospiraceae bacterium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1327005956: SRR7564840,SRR7565338,SRR7561014,SRR7558442,SRR7564336,SRR7558595,SRR7567829,SRR7562632,SRR7566760,SRR7559079,SRR7564498,SRR7559529,SRR7569330,SRR7557870,SRR7557869,SRR7569098,SRR7566813,SRR7558773,SRR7558772,SRR7566486,SRR7560582,SRR7560583,SRR7563299,SRR7565604,SRR7559657,SRR7563424,SRR7567395
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: collection date
attributes.value: not provided
attributes.tag: sample derived from
attributes.value: SAMN09408137,SAMN09410101,SAMN09410790,SAMN09411180,SAMN09411655,SAMN09412361,SAMN09412994,SAMN09413464,SAMN09413503,SAMN09413511,SAMN09413792,SAMN09414199,SAMN09414708,SAMN09415119,SAMN09415119,SAMN09415798,SAMN09416410,SAMN09416798,SAMN09416798,SAMN09416949,SAMN09417109,SAMN09417109,SAMN09417346,SAMN09417711,SAMN09418610,SAMN09419316,SAMN09419417
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: contamination score
attributes.value: 0.68
attributes.tag: host sex
attributes.value: male
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:08Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:39:11Z
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: organism
attributes.value: uncultured Ruminococcaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 98.25
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: scientific_name
attributes.value: uncultured Ruminococcaceae bacterium
attributes.tag: common name
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: isolation_source
attributes.value: human gut
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15