title: TEDDY OU Gut MAG
organism: Mediterraneibacter gnavus
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1354562324: SRR7564048,SRR7569323,SRR7568237,SRR7562331,SRR7560028,SRR7567702,SRR7562034,SRR7557137,SRR7568135,SRR7558119,SRR7556852,SRR7559607,SRR7559403,SRR7559899,SRR7563297,SRR7559546,SRR7564069,SRR7560846,SRR7563754,SRR7558451,SRR7558450,SRR7562856,SRR7567438,SRR7557726,SRR7559730,SRR7568152
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:50:00Z
attributes.tag: External Id
attributes.value: SAMEA7432935
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:50:00Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1354562324_MAG55
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.93
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.10
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408949,SAMN09409319,SAMN09409686,SAMN09410218,SAMN09410857,SAMN09411547,SAMN09412831,SAMN09413113,SAMN09413120,SAMN09413770,SAMN09413850,SAMN09414125,SAMN09414541,SAMN09414625,SAMN09415032,SAMN09415259,SAMN09415710,SAMN09416380,SAMN09416545,SAMN09416923,SAMN09416923,SAMN09417469,SAMN09418579,SAMN09418876,SAMN09420527,SAMN09420632
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1354562324_MAG55
attributes.tag: scientific_name
attributes.value: [Ruminococcus] gnavus
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach