title: TEDDY OU Gut MAG
organism: Hungatella effluvii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1279157655: SRR7560232,SRR7558732,SRR7558435,SRR7567585,SRR7565227,SRR7561677,SRR7562188,SRR7569401,SRR7567157,SRR7564637,SRR7565392,SRR7558900,SRR7562132,SRR7568358,SRR7569895,SRR7557032,SRR7562923,SRR7569459,SRR7557429,SRR7557428,SRR7558789,SRR7556948,SRR7559856,SRR7565403,SRR7569505,SRR7559193,SRR7569618,SRR7565853,SRR7561826,SRR7561232,SRR7569032
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:22:08Z
attributes.tag: External Id
attributes.value: SAMEA7430847
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:22:08Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1279157655_MAG58
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.43
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.37
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408752,SAMN09409774,SAMN09409865,SAMN09410066,SAMN09410290,SAMN09410769,SAMN09411977,SAMN09412630,SAMN09413261,SAMN09413443,SAMN09413473,SAMN09414547,SAMN09414648,SAMN09415503,SAMN09415863,SAMN09415917,SAMN09416395,SAMN09416495,SAMN09417047,SAMN09417047,SAMN09417303,SAMN09418549,SAMN09418663,SAMN09418774,SAMN09419519,SAMN09419853,SAMN09420053,SAMN09420135,SAMN09420505,SAMN09420555,SAMN09420678
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1279157655_MAG58
attributes.tag: scientific_name
attributes.value: Hungatella effluvii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach