title: TEDDY OU Gut MAG
organism: Clostridium sp. AM34-11AC
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1296635662: SRR7563361,SRR7564284,SRR7560556,SRR7567134,SRR7561129,SRR7564289,SRR7565357,SRR7558363,SRR7565084,SRR7562264,SRR7567308,SRR7561987,SRR7567346,SRR7561843,SRR7563503,SRR7563502,SRR7562082,SRR7562081,SRR7562885,SRR7562886,SRR7563293,SRR7563160,SRR7563184,SRR7568777,SRR7562460,SRR7559689,SRR7566332,SRR7563231,SRR7563230,SRR7565751,SRR7565802,SRR7569048,SRR7567287,SRR7568742
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:28:55Z
attributes.tag: External Id
attributes.value: SAMEA7431616
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:28:55Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1296635662_MAG75
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.57
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 2.53
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408196,SAMN09408256,SAMN09408831,SAMN09409051,SAMN09409489,SAMN09409510,SAMN09409654,SAMN09409668,SAMN09410475,SAMN09411577,SAMN09411598,SAMN09413185,SAMN09413532,SAMN09414448,SAMN09414701,SAMN09414701,SAMN09414814,SAMN09414814,SAMN09414853,SAMN09414853,SAMN09415640,SAMN09415778,SAMN09417136,SAMN09417315,SAMN09417505,SAMN09417677,SAMN09417683,SAMN09418541,SAMN09418541,SAMN09418576,SAMN09419117,SAMN09420257,SAMN09420858,SAMN09421197
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1296635662_MAG75
attributes.tag: scientific_name
attributes.value: Clostridium sp. AM34-11AC
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach