title: TEDDY OU Gut MAG
organism: [Clostridium] hylemonae
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1303742534: SRR7564155,SRR7561065,SRR7565076,SRR7567194,SRR7564659,SRR7564660,SRR7563458,SRR7558575,SRR7566753,SRR7566752,SRR7567461,SRR7569070,SRR7568338,SRR7568339,SRR7569525,SRR7569146,SRR7564752,SRR7564187,SRR7567649,SRR7568668,SRR7559131,SRR7559132,SRR7562437
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:31:35Z
attributes.tag: External Id
attributes.value: SAMEA7431776
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:31:35Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1303742534_MAG46
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.50
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.58
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408051,SAMN09408687,SAMN09409196,SAMN09409743,SAMN09410194,SAMN09410194,SAMN09410587,SAMN09410698,SAMN09413130,SAMN09413130,SAMN09413380,SAMN09414317,SAMN09414619,SAMN09414619,SAMN09415154,SAMN09415672,SAMN09416281,SAMN09417645,SAMN09417922,SAMN09418490,SAMN09418957,SAMN09418957,SAMN09420653
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1303742534_MAG46
attributes.tag: scientific_name
attributes.value: [Clostridium] hylemonae
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach