title: TEDDY OU Gut MAG
organism: Ruminococcus bicirculans (ex Wegman et al. 2014)
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1277891000: SRR7567803,SRR7567368,SRR7557225,SRR7557226,SRR7566761,SRR7559903,SRR7562593,SRR7562592,SRR7566946,SRR7565543,SRR7564728,SRR7562682,SRR7560849,SRR7559223,SRR7565132,SRR7567954,SRR7560879,SRR7558632,SRR7566501,SRR7567791,SRR7569798,SRR7563538,SRR7568151,SRR7560310,SRR7558586,SRR7563642,SRR7567096,SRR7558145,SRR7561433,SRR7557908,SRR7564255,SRR7561923,SRR7568168,SRR7560260,SRR7564464
attributes.tag: ENA first public
attributes.value: 2021-01-30
attributes.tag: ENA last update
attributes.value: 2020-10-15
attributes.tag: External Id
attributes.value: SAMEA7430722
attributes.tag: INSDC center alias
attributes.value: Pan Lab at OU
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:20:10Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1277891000_MAG35
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.63
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408149,SAMN09408906,SAMN09409069,SAMN09409069,SAMN09409373,SAMN09409469,SAMN09409915,SAMN09409915,SAMN09409990,SAMN09411211,SAMN09411621,SAMN09411666,SAMN09412488,SAMN09412700,SAMN09412765,SAMN09412970,SAMN09414122,SAMN09414535,SAMN09414728,SAMN09414838,SAMN09415323,SAMN09416083,SAMN09416236,SAMN09416383,SAMN09416401,SAMN09416469,SAMN09416483,SAMN09416622,SAMN09416624,SAMN09416684,SAMN09416924,SAMN09417322,SAMN09418229,SAMN09419615,SAMN09419973
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1277891000_MAG35
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach