title: TEDDY OU Gut MAG
organism: [Clostridium] symbiosum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1361349376: SRR7564033,SRR7568154,SRR7568170,SRR7566613,SRR7561441,SRR7564052,SRR7561997,SRR7569754,SRR7567868,SRR7566976,SRR7563757,SRR7565134,SRR7565621,SRR7564577,SRR7564084,SRR7558711,SRR7565548,SRR7561332,SRR7563843,SRR7569566,SRR7567558,SRR7566105,SRR7568473,SRR7566259,SRR7561081,SRR7567027,SRR7557058,SRR7557084,SRR7565198,SRR7568919,SRR7559994,SRR7569002,SRR7560822,SRR7561831,SRR7558993,SRR7568398,SRR7567296,SRR7565667
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:52:49Z
attributes.tag: External Id
attributes.value: SAMEA7433111
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:52:49Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1361349376_MAG101
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.21
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408368,SAMN09408676,SAMN09408809,SAMN09409053,SAMN09409977,SAMN09410151,SAMN09410392,SAMN09410879,SAMN09411009,SAMN09411130,SAMN09411828,SAMN09412194,SAMN09412334,SAMN09412911,SAMN09413483,SAMN09413486,SAMN09413632,SAMN09413714,SAMN09414040,SAMN09414238,SAMN09414568,SAMN09414598,SAMN09415698,SAMN09415941,SAMN09416623,SAMN09417166,SAMN09417400,SAMN09417483,SAMN09417570,SAMN09417927,SAMN09418447,SAMN09418980,SAMN09419600,SAMN09419789,SAMN09419992,SAMN09420045,SAMN09420127,SAMN09420221
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1361349376_MAG101
attributes.tag: scientific_name
attributes.value: [Clostridium] symbiosum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach