title: TEDDY OU Gut MAG
organism: [Ruminococcus] lactaris
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1366028512: SRR7559874,SRR7559873,SRR7560337,SRR7564526,SRR7558127,SRR7562943,SRR7565407,SRR7558136,SRR7559942,SRR7569117,SRR7568300,SRR7557846,SRR7567054,SRR7567292,SRR7560957,SRR7560719,SRR7565975,SRR7567158,SRR7567832,SRR7567831,SRR7568431,SRR7560157,SRR7569319,SRR7566233,SRR7569697,SRR7568296,SRR7561286,SRR7566693,SRR7557112,SRR7566559,SRR7562750,SRR7562819,SRR7566914,SRR7566879
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:55:29Z
attributes.tag: External Id
attributes.value: SAMEA7433278
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:55:29Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1366028512_MAG51
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.49
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408015,SAMN09408015,SAMN09408274,SAMN09408403,SAMN09408704,SAMN09408999,SAMN09409925,SAMN09411603,SAMN09412246,SAMN09412688,SAMN09413180,SAMN09414201,SAMN09414849,SAMN09415289,SAMN09415459,SAMN09415557,SAMN09415940,SAMN09416162,SAMN09416444,SAMN09416444,SAMN09416486,SAMN09417044,SAMN09417070,SAMN09417100,SAMN09417377,SAMN09417676,SAMN09417839,SAMN09418235,SAMN09418426,SAMN09418820,SAMN09418918,SAMN09419449,SAMN09420551,SAMN09420919
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1366028512_MAG51
attributes.tag: scientific_name
attributes.value: [Ruminococcus] lactaris
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach