title: TEDDY OU Gut MAG
organism: Firmicutes bacterium AM55-24TS
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1220546515: SRR7561177,SRR7559797,SRR7560997,SRR7557699,SRR7558144,SRR7562770,SRR7558029,SRR7562988,SRR7570000,SRR7560025,SRR7565910,SRR7565109,SRR7559786,SRR7562352,SRR7564541,SRR7560332,SRR7565692,SRR7564799,SRR7560900,SRR7559501,SRR7567948,SRR7568426,SRR7565409
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T05:56:04Z
attributes.tag: External Id
attributes.value: SAMEA7429276
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T05:56:04Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1220546515_MAG94
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.66
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.01
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408367,SAMN09408811,SAMN09409968,SAMN09410925,SAMN09411027,SAMN09411593,SAMN09412146,SAMN09413538,SAMN09413689,SAMN09413941,SAMN09414162,SAMN09415014,SAMN09415683,SAMN09415933,SAMN09416224,SAMN09416262,SAMN09417216,SAMN09417292,SAMN09417962,SAMN09419982,SAMN09420256,SAMN09420528,SAMN09420791
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1220546515_MAG94
attributes.tag: scientific_name
attributes.value: Firmicutes bacterium AM55-24TS
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach