title: TEDDY OU Gut MAG
organism: Mediterraneibacter torques
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1398327253: SRR7568313,SRR7568701,SRR7561733,SRR7565563,SRR7563202,SRR7562140,SRR7564719,SRR7559832,SRR7558626,SRR7560697,SRR7562928,SRR7563745,SRR7563491,SRR7562163,SRR7566524,SRR7558531,SRR7561975,SRR7562109,SRR7562581,SRR7567951,SRR7561724,SRR7566395,SRR7563799,SRR7563527,SRR7566919,SRR7566920,SRR7565922,SRR7559277,SRR7562452
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:01Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:09:59Z
attributes.tag: External Id
attributes.value: SAMEA7434199
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:01Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:09:59Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1398327253_MAG47
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.82
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408209,SAMN09408722,SAMN09409047,SAMN09409438,SAMN09409755,SAMN09409792,SAMN09410283,SAMN09410613,SAMN09411059,SAMN09411526,SAMN09411766,SAMN09412023,SAMN09412397,SAMN09412843,SAMN09413129,SAMN09413720,SAMN09413895,SAMN09415671,SAMN09416906,SAMN09416935,SAMN09417757,SAMN09417770,SAMN09417991,SAMN09418441,SAMN09419690,SAMN09419690,SAMN09420050,SAMN09420174,SAMN09420778
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1398327253_MAG47
attributes.tag: scientific_name
attributes.value: [Ruminococcus] torques
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach