title: TEDDY OU Gut MAG
organism: Eubacterium sp. AM28-29
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1413473616: SRR7569688,SRR7557134,SRR7569764,SRR7567180,SRR7557293,SRR7566619,SRR7558935,SRR7562537,SRR7562538,SRR7563560,SRR7559349,SRR7566267,SRR7568599,SRR7563702,SRR7559839,SRR7569873,SRR7564323,SRR7568005,SRR7565559,SRR7568980,SRR7566189,SRR7566190,SRR7562149,SRR7568380,SRR7567926,SRR7557391,SRR7561978,SRR7561979,SRR7566885,SRR7566886,SRR7561921,SRR7559164,SRR7559467,SRR7565710,SRR7558421,SRR7560779,SRR7567213,SRR7560090,SRR7568409,SRR7562729,SRR7562730,SRR7563571
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:17:26Z
attributes.tag: External Id
attributes.value: SAMEA7434666
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:17:26Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1413473616_MAG63
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.71
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.71
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408212,SAMN09408240,SAMN09408505,SAMN09409049,SAMN09409178,SAMN09409335,SAMN09409829,SAMN09409998,SAMN09409998,SAMN09410360,SAMN09411327,SAMN09411528,SAMN09412430,SAMN09412665,SAMN09412881,SAMN09413011,SAMN09413067,SAMN09413245,SAMN09413926,SAMN09414789,SAMN09414892,SAMN09414892,SAMN09416011,SAMN09416227,SAMN09416463,SAMN09416901,SAMN09417055,SAMN09417055,SAMN09417365,SAMN09417365,SAMN09417503,SAMN09417783,SAMN09417840,SAMN09418207,SAMN09419160,SAMN09419883,SAMN09420206,SAMN09420472,SAMN09420604,SAMN09421048,SAMN09421048,SAMN09421183
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1413473616_MAG63
attributes.tag: scientific_name
attributes.value: Eubacterium sp. AM28-29
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach