title: TEDDY OU Gut MAG
organism: Thomasclavelia spiroformis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1244917006: SRR7568680,SRR7558858,SRR7561510,SRR7563006,SRR7561159,SRR7568892,SRR7562613,SRR7569352,SRR7567041,SRR7560071,SRR7557203,SRR7567047,SRR7558395,SRR7563886,SRR7557444,SRR7562660,SRR7564590
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:56Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:06:17Z
attributes.tag: External Id
attributes.value: SAMEA7429874
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:56Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:06:17Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1244917006_MAG66
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.52
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.94
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408489,SAMN09410432,SAMN09410598,SAMN09410978,SAMN09411254,SAMN09412271,SAMN09412974,SAMN09413150,SAMN09413348,SAMN09414348,SAMN09414821,SAMN09416987,SAMN09417319,SAMN09417784,SAMN09418265,SAMN09419127,SAMN09419952
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1244917006_MAG66
attributes.tag: scientific_name
attributes.value: [Clostridium] spiroforme
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach