title: TEDDY OU Gut MAG
organism: Ruminococcus sp. AM42-11
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1391457984: SRR7562546,SRR7565098,SRR7569311,SRR7564141,SRR7564014,SRR7568866,SRR7557892,SRR7556793,SRR7561209,SRR7562747,SRR7557231,SRR7560233,SRR7557378,SRR7562831,SRR7567324,SRR7565317,SRR7562461,SRR7563900,SRR7565143,SRR7557278,SRR7558327,SRR7566273,SRR7568585,SRR7565270,SRR7561696,SRR7566728,SRR7564186,SRR7564290,SRR7561851,SRR7563132,SRR7564866,SRR7559425,SRR7560717,SRR7567379,SRR7569236,SRR7568799,SRR7557257,SRR7560735,SRR7563473,SRR7559202,SRR7559203
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:06:41Z
attributes.tag: External Id
attributes.value: SAMEA7433984
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:06:41Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1391457984_MAG36
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.29
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.63
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408083,SAMN09408795,SAMN09408956,SAMN09408964,SAMN09409063,SAMN09409601,SAMN09409617,SAMN09409735,SAMN09410666,SAMN09410795,SAMN09410802,SAMN09410979,SAMN09411331,SAMN09411335,SAMN09411448,SAMN09411917,SAMN09412709,SAMN09412742,SAMN09413379,SAMN09413908,SAMN09414039,SAMN09414148,SAMN09414250,SAMN09414585,SAMN09414866,SAMN09415167,SAMN09415533,SAMN09415678,SAMN09416660,SAMN09416679,SAMN09416928,SAMN09418338,SAMN09418421,SAMN09418451,SAMN09419339,SAMN09419487,SAMN09419492,SAMN09419548,SAMN09420616,SAMN09421205,SAMN09421205
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1391457984_MAG36
attributes.tag: scientific_name
attributes.value: Ruminococcus sp. AM42-11
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach