title: TEDDY OU Gut MAG
organism: Longicatena caecimuris
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1265950444: SRR7561184,SRR7562361,SRR7564268,SRR7564889,SRR7567319,SRR7563136,SRR7562544,SRR7557475,SRR7567111,SRR7567491,SRR7563477,SRR7564828,SRR7559978,SRR7566792,SRR7563114,SRR7557525,SRR7559251,SRR7560385,SRR7560750,SRR7569943,SRR7565757,SRR7567456,SRR7556862,SRR7568514,SRR7564461,SRR7563328,SRR7569994,SRR7566612,SRR7564062,SRR7569357,SRR7558594
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T06:17:08Z
attributes.tag: External Id
attributes.value: SAMEA7430534
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T06:17:08Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1265950444_MAG94
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 100
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.94
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408254,SAMN09408358,SAMN09408812,SAMN09408818,SAMN09408877,SAMN09409007,SAMN09409195,SAMN09409461,SAMN09410010,SAMN09410581,SAMN09410760,SAMN09412787,SAMN09413266,SAMN09413873,SAMN09414553,SAMN09414575,SAMN09414857,SAMN09416089,SAMN09416107,SAMN09416190,SAMN09417397,SAMN09417901,SAMN09418264,SAMN09419826,SAMN09420007,SAMN09420212,SAMN09420241,SAMN09420351,SAMN09420438,SAMN09420675,SAMN09420688
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1265950444_MAG94
attributes.tag: scientific_name
attributes.value: Longicatena caecimuris
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach