title: TEDDY OU Gut MAG
organism: Roseburia sp. AF12-17LB
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1409003264: SRR7562674,SRR7569083,SRR7564651,SRR7569042,SRR7564432,SRR7561553,SRR7568920,SRR7566795,SRR7559532,SRR7568297,SRR7568966,SRR7566384,SRR7563577,SRR7568228,SRR7566609,SRR7567869,SRR7566035,SRR7558970,SRR7565895,SRR7561789,SRR7560561,SRR7563588,SRR7562811,SRR7567340,SRR7559447,SRR7557292,SRR7559194,SRR7566197,SRR7567924,SRR7557893,SRR7561107,SRR7557765,SRR7560767
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T07:15:19Z
attributes.tag: External Id
attributes.value: SAMEA7434538
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T07:15:19Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1409003264_MAG80
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.24
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.72
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408350,SAMN09408543,SAMN09408902,SAMN09409687,SAMN09410242,SAMN09410602,SAMN09410637,SAMN09410704,SAMN09410984,SAMN09410988,SAMN09411292,SAMN09411432,SAMN09411534,SAMN09412105,SAMN09412637,SAMN09412664,SAMN09413020,SAMN09413436,SAMN09413716,SAMN09413800,SAMN09414118,SAMN09414509,SAMN09415376,SAMN09415413,SAMN09416069,SAMN09416152,SAMN09416297,SAMN09418997,SAMN09419001,SAMN09419538,SAMN09419946,SAMN09420154,SAMN09420836
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1409003264_MAG80
attributes.tag: scientific_name
attributes.value: Roseburia sp. AF12-17LB
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach