organism: human gut metagenome
description: IBD patient fecal sample
attributes.tag: ENA first public
attributes.value: 2020-12-18
attributes.tag: ENA last update
attributes.value: 2020-12-17
attributes.tag: External Id
attributes.value: SAMEA7731549
attributes.tag: INSDC center alias
attributes.value: UCSDMI
attributes.tag: INSDC center name
attributes.value: University of California San Diego Microbiome Initiative
attributes.tag: INSDC first public
attributes.value: 2020-12-18T04:08:23Z
attributes.tag: INSDC last update
attributes.value: 2020-12-17T22:12:11Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: qiita_sid_12675:12675.FIT080E3CAL
attributes.tag: age_at__diagnosis
attributes.value: 22
attributes.tag: alb_g_per_dl
attributes.value: 4.8
attributes.tag: aliquoted_for_genomics
attributes.value: yes
attributes.tag: behavior
attributes.value: Non-s/non-p
attributes.tag: biologic_therapy
attributes.value: ADA 40 mg SQ EOW (2/2016-5/2016; from rheum, felt it was making her ill)
attributes.tag: blood
attributes.value: PLCL26255
attributes.tag: cdai
attributes.value: not done
attributes.tag: collection_timestamp
attributes.value: 9.18.2016
attributes.tag: diagnosis
attributes.value: CD
attributes.tag: diagnosis date
attributes.value: 2.1.2014
attributes.tag: dna_extracted
attributes.value: TRUE
attributes.tag: elevation
attributes.value: 193
attributes.tag: empo_1
attributes.value: Host-associated
attributes.tag: empo_2
attributes.value: Animal
attributes.tag: empo_3
attributes.value: Animal distal gut
attributes.tag: env biome
attributes.value: urban biome
attributes.tag: env feature
attributes.value: human-associated habitat
attributes.tag: env package
attributes.value: human-gut
attributes.tag: env_material
attributes.value: feces
attributes.tag: extent_of_affected_surface_ileum
attributes.value: 1
attributes.tag: extent_of_affected_surface_left_colon
attributes.value: 0
attributes.tag: extent_of_affected_surface_rectum
attributes.value: 0
attributes.tag: extent_of_affected_surface_right_colon
attributes.value: 0
attributes.tag: extent_of_affected_surface_sub_score
attributes.value: 1
attributes.tag: extent_of_affected_surface_transverse_colon
attributes.value: 0
attributes.tag: extent_of_ulcerated_surface_ileum
attributes.value: 1
attributes.tag: extent_of_ulcerated_surface_left_colon
attributes.value: 0
attributes.tag: extent_of_ulcerated_surface_rectum
attributes.value: 0
attributes.tag: extent_of_ulcerated_surface_right_colon
attributes.value: 0
attributes.tag: extent_of_ulcerated_surface_sub_total
attributes.value: 1
attributes.tag: extent_of_ulcerated_surface_transverse_colon
attributes.value: 0
attributes.tag: final_metabolomics_weight
attributes.value: 0.1159
attributes.tag: first_patient_metadata_line
attributes.value: 389
attributes.tag: found_in_proteome_aliquot_list
attributes.value: yes
attributes.tag: genomic_sample_underwent_24h_thaw
attributes.value: no
attributes.tag: geo loc name
attributes.value: USA:CA,San Diego
attributes.tag: hospitalizations
attributes.value: N
attributes.tag: host age
attributes.value: 28
attributes.tag: host body habitat
attributes.value: UBERON:feces
attributes.tag: host body mass index
attributes.value: not provided
attributes.tag: host body product
attributes.value: UBERON:feces
attributes.tag: host body site
attributes.value: UBERON:feces
attributes.tag: host common name
attributes.value: human
attributes.tag: host height
attributes.value: 162.6
attributes.tag: host life stage
attributes.value: adult
attributes.tag: host scientific name
attributes.value: Homo sapiens
attributes.tag: host subject id
attributes.value: 150675-99
attributes.tag: host taxid
attributes.value: 9606
attributes.tag: host weight
attributes.value: not provided
attributes.tag: host_age_units
attributes.value: years
attributes.tag: host_height_units
attributes.value: cm
attributes.tag: host_weight_units
attributes.value: kg
attributes.tag: ibd_history
attributes.value: N
attributes.tag: ileum_examined_accessed_resected_or_inaccessible
attributes.value: Accessed
attributes.tag: inflamed_tissue
attributes.value: Il
attributes.tag: lab_info_date
attributes.value: 10.7.2016
attributes.tag: latitude
attributes.value: 32.5
attributes.tag: left_colon_examined_accessed_resected_or_inaccessible
attributes.value: Accessed
attributes.tag: location
attributes.value: Ileal
attributes.tag: longitude
attributes.value: -117.25
attributes.tag: lymph_prcntg
attributes.value: 28
attributes.tag: mcv_um3
attributes.value: 90.7
attributes.tag: metabolomic_sample_underwent_24h_thaw
attributes.value: no
attributes.tag: most_recent_metadata_line_match
attributes.value: 389
attributes.tag: mp
attributes.value: 50 mg PO QD (2013-5/2015)
attributes.tag: not_inflamed_tissue
attributes.value: RC, LC, R
attributes.tag: original_metabolomics_weight
attributes.value: 0.1159
attributes.tag: patient id
attributes.value: 150675-99
attributes.tag: patient number
attributes.value: 99
attributes.tag: physical_specimen_location
attributes.value: UCSDMI
attributes.tag: physical_specimen_remaining
attributes.value: TRUE
attributes.tag: plt_1000_mm3
attributes.value: 180
attributes.tag: pouch
attributes.value: N
attributes.tag: presence_and_size_of_ulcers_ses_cd_ileum
attributes.value: 2
attributes.tag: presence_and_size_of_ulcers_ses_cd_left_colon
attributes.value: 0
attributes.tag: presence_and_size_of_ulcers_ses_cd_rectum
attributes.value: 0
attributes.tag: presence_and_size_of_ulcers_ses_cd_right_colon
attributes.value: 0
attributes.tag: presence_and_size_of_ulcers_ses_cd_sub_total
attributes.value: 2
attributes.tag: presence_and_size_of_ulcers_sescd_transverse
attributes.value: 0
attributes.tag: presence_and_type_of_narrowings_ileum
attributes.value: 0
attributes.tag: presence_and_type_of_narrowings_left_colon
attributes.value: 0
attributes.tag: presence_and_type_of_narrowings_rectum
attributes.value: 0
attributes.tag: presence_and_type_of_narrowings_right_colon
attributes.value: 0
attributes.tag: presence_and_type_of_narrowings_sub_score
attributes.value: 0
attributes.tag: presence_and_type_of_narrowings_transverse
attributes.value: 0
attributes.tag: procedure_date
attributes.value: 9.19.2016
attributes.tag: proteome_id
attributes.value: 94
attributes.tag: race
attributes.value: Asian
attributes.tag: raw_metadata_line
attributes.value: 389
attributes.tag: realiquoted_for_metabolomics_or_genomics
attributes.value: no
attributes.tag: rectum_examined_accessed_resected_or_inaccessible
attributes.value: Accessed
attributes.tag: right_colon_examined_accessed_resected_or_inaccessible
attributes.value: Accessed
attributes.tag: sample name
attributes.value: qiita_sid_12675:12675.FIT080E3CAL
attributes.tag: sample type
attributes.value: feces
attributes.tag: ses_cd_total_score
attributes.value: 4
attributes.tag: sex
attributes.value: female
attributes.tag: smoking
attributes.value: N
attributes.tag: steroids
attributes.value: Budesonide tap. 9 mg PO QD (2013- worse w/ taper)
attributes.tag: stools_before_dx
attributes.value: 0 to 1
attributes.tag: subject id
attributes.value: 150675-99
attributes.tag: subjectid
attributes.value: 150675-99
attributes.tag: transferred_into_glycerol
attributes.value: yes
attributes.tag: transverse_examined_accessed_resected_or_inaccessible
attributes.value: Accessed
attributes.tag: tube_id
attributes.value: FIT080E3CAL
attributes.tag: wbc_1000_mm3
attributes.value: 6.8
attributes.tag: yob
attributes.value: 12.4.1991