organism: marine metagenome
description: mgs21554 Taxonomy ID:408172
attributes.tag: BROKER_OBJECT_ID
attributes.value: mgm4441025.3
attributes.tag: ENA first public
attributes.value: 2018-10-11
attributes.tag: ENA last update
attributes.value: 2017-11-07
attributes.tag: External Id
attributes.value: SAMEA104371131
attributes.tag: INSDC center alias
attributes.value: División de Microbiología, Universidad Miguel Hernández
attributes.tag: INSDC center name
attributes.value: División de Microbiología, Universidad Miguel Hernández
attributes.tag: INSDC first public
attributes.value: 2018-10-11T17:03:09Z
attributes.tag: INSDC last update
attributes.value: 2017-11-07T18:25:11Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: mgs21554
attributes.tag: broker name
attributes.value: Metagenomics RAST Server
attributes.tag: collection date
attributes.value: 2004-11-17
attributes.tag: collection_timezone
attributes.value: UTC
attributes.tag: environment (biome)
attributes.value: marine habitat
attributes.tag: environment (feature)
attributes.value: marine habitat
attributes.tag: environment (material)
attributes.value: marine habitat
attributes.tag: environmental package
attributes.value: water
attributes.tag: geodetic_system
attributes.value: wgs_84
attributes.tag: geographic location (country and/or sea)
attributes.value: Italy
attributes.tag: geographic location (depth)
attributes.value: 3101
attributes.tag: geographic location (latitude)
attributes.value: 36.51
attributes.tag: geographic location (longitude)
attributes.value: 15.68
attributes.tag: geographic location (region and locality)
attributes.value: Ionian Km3 station
attributes.tag: investigation type
attributes.value: mimarks-survey
attributes.tag: isol_growth_condt
attributes.value: 17878949
attributes.tag: metagenome_taxonomy
attributes.value: marine
attributes.tag: project name
attributes.value: Mediterranean Bathypelagic Habitat
attributes.tag: salinity
attributes.value: 3.875
attributes.tag: samp_collect_device
attributes.value: 250 l of seawater were collected by using Niskin bottles mounted on a General Oceanics rosette from a depth of 3,010 m (sea-bottom at 3,243 m depth) at the Ionian Km3 station November 17th 2004 during a cruise of the R/V Urania. Seawater was sequentially filtered through a 5 m pore size polycarbonate filter and the filtrate passed through 0.22 m pore size Sterivex filters (Durapore, Millipore) using a peristaltic pumping system. Sterivex filters were filled with lysis buffer (40 mM EDTA, 50 mM Tris/ HCl, 0.75M sucrose) and stored at −20C, until DNA extraction.
attributes.tag: samp_size
attributes.value: 250 Litres
attributes.tag: samp_store_temp
attributes.value: -20
attributes.tag: sample name
attributes.value: mgs21554
attributes.tag: sequencing method
attributes.value: other
attributes.tag: temp
attributes.value: 13.93
attributes.tag: temperature
attributes.value: 13.93
attributes.tag: water environmental package
attributes.value: water