title: TEDDY OU Gut MAG
organism: Enterococcus faecalis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1812675350: SRR7565636,SRR7565637,SRR7564138,SRR7564149,SRR7561841,SRR7561840,SRR7556891,SRR7558965,SRR7559167,SRR7566132,SRR7566133,SRR7560758,SRR7560757,SRR7566934,SRR7560438,SRR7561794,SRR7565838,SRR7559952,SRR7557961,SRR7569542,SRR7561845,SRR7559196,SRR7559861,SRR7562031,SRR7568047
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:06:34Z
attributes.tag: External Id
attributes.value: SAMEA7445404
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:02Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:06:34Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1812675350_MAG74
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.19
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.20
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408011,SAMN09408011,SAMN09408913,SAMN09410991,SAMN09411396,SAMN09411396,SAMN09412384,SAMN09412676,SAMN09413478,SAMN09414342,SAMN09414342,SAMN09414427,SAMN09414427,SAMN09415055,SAMN09415176,SAMN09415256,SAMN09415869,SAMN09416470,SAMN09416504,SAMN09417650,SAMN09419251,SAMN09419343,SAMN09419567,SAMN09419885,SAMN09420623
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1812675350_MAG74
attributes.tag: scientific_name
attributes.value: Enterococcus faecalis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach