title: TEDDY OU Gut MAG
organism: Bifidobacterium pseudocatenulatum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1879042436: SRR7566655,SRR7568453,SRR7567964,SRR7565268,SRR7564435,SRR7558468,SRR7558325,SRR7558928,SRR7560859,SRR7562667,SRR7562008,SRR7569953,SRR7567613,SRR7562937,SRR7556835,SRR7559269,SRR7565824,SRR7559967,SRR7566787,SRR7564056,SRR7566857,SRR7560018,SRR7566331
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:36:48Z
attributes.tag: External Id
attributes.value: SAMEA7447308
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:36:48Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1879042436_MAG15
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 99.85
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.23
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408040,SAMN09408908,SAMN09409562,SAMN09410412,SAMN09411453,SAMN09411463,SAMN09411611,SAMN09411676,SAMN09412183,SAMN09413788,SAMN09413962,SAMN09414060,SAMN09414316,SAMN09415571,SAMN09417591,SAMN09418005,SAMN09418613,SAMN09418911,SAMN09419261,SAMN09419382,SAMN09419451,SAMN09419453,SAMN09420624
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1879042436_MAG15
attributes.tag: scientific_name
attributes.value: Bifidobacterium pseudocatenulatum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach