title: TEDDY OU Gut MAG
organism: Bacteroides fragilis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1936089402: SRR7567797,SRR7560339,SRR7556845,SRR7557825,SRR7568810,SRR7564365,SRR7564760,SRR7558721,SRR7566038,SRR7559335,SRR7560493,SRR7557598,SRR7559619,SRR7565224,SRR7561855,SRR7565668,SRR7562114,SRR7558551,SRR7557102,SRR7560591,SRR7569233,SRR7563670,SRR7561973,SRR7561031,SRR7558015,SRR7569818,SRR7559631,SRR7557340,SRR7567384,SRR7568717,SRR7558771,SRR7561238,SRR7565215,SRR7559556,SRR7560777,SRR7557167,SRR7557678,SRR7568408,SRR7563234,SRR7557920,SRR7558107,SRR7564898
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:56:09Z
attributes.tag: External Id
attributes.value: SAMEA7448721
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:56:09Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1936089402_MAG48
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.12
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408547,SAMN09409042,SAMN09410353,SAMN09410464,SAMN09410509,SAMN09410682,SAMN09410928,SAMN09411054,SAMN09411243,SAMN09411302,SAMN09411536,SAMN09411690,SAMN09412389,SAMN09412828,SAMN09413144,SAMN09413161,SAMN09413768,SAMN09413851,SAMN09413904,SAMN09414135,SAMN09415106,SAMN09415131,SAMN09415199,SAMN09415597,SAMN09415659,SAMN09415731,SAMN09416055,SAMN09416498,SAMN09416709,SAMN09417118,SAMN09417272,SAMN09417502,SAMN09418481,SAMN09418935,SAMN09419167,SAMN09419272,SAMN09419583,SAMN09419609,SAMN09419667,SAMN09420092,SAMN09420689,SAMN09420991
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1936089402_MAG48
attributes.tag: scientific_name
attributes.value: Bacteroides fragilis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach