title: TEDDY OU Gut MAG
organism: Oscillospiraceae bacterium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1885985196: SRR7566039,SRR7567988,SRR7558140,SRR7569905,SRR7558558,SRR7560206,SRR7557064,SRR7557844,SRR7560642,SRR7561127,SRR7569438,SRR7558476,SRR7558969,SRR7569040,SRR7565135
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: collection date
attributes.value: not provided
attributes.tag: sample derived from
attributes.value: SAMN09408175,SAMN09408263,SAMN09408306,SAMN09411080,SAMN09411739,SAMN09413195,SAMN09415894,SAMN09416079,SAMN09416711,SAMN09417293,SAMN09417341,SAMN09418769,SAMN09419180,SAMN09419203,SAMN09421091
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: contamination score
attributes.value: 0.34
attributes.tag: host sex
attributes.value: male
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:39:50Z
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: organism
attributes.value: Ruminococcaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 97.14
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: scientific_name
attributes.value: Ruminococcaceae bacterium
attributes.tag: common name
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: isolation_source
attributes.value: human gut
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15