title: TEDDY OU Gut MAG
organism: [Ruminococcus] lactaris
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1841090184: SRR7564978,SRR7565351,SRR7566247,SRR7564004,SRR7568176,SRR7562291,SRR7562292,SRR7564618,SRR7564619,SRR7558418,SRR7558419,SRR7563598,SRR7558010,SRR7567968,SRR7566513,SRR7558097,SRR7561684,SRR7559071,SRR7559072,SRR7561150,SRR7567093,SRR7559063,SRR7558110,SRR7563203,SRR7561560,SRR7562566,SRR7562565,SRR7565772,SRR7564601,SRR7557692,SRR7558544,SRR7565235,SRR7565236,SRR7569488,SRR7568071
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:23:06Z
attributes.tag: External Id
attributes.value: SAMEA7446441
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:23:06Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1841090184_MAG63
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.79
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408238,SAMN09408382,SAMN09408990,SAMN09409249,SAMN09409856,SAMN09410217,SAMN09410217,SAMN09411174,SAMN09411174,SAMN09411424,SAMN09411424,SAMN09411596,SAMN09412061,SAMN09413454,SAMN09414972,SAMN09415336,SAMN09415472,SAMN09416164,SAMN09416164,SAMN09416321,SAMN09416543,SAMN09416992,SAMN09417642,SAMN09417664,SAMN09418704,SAMN09418792,SAMN09418792,SAMN09418893,SAMN09419096,SAMN09419570,SAMN09420205,SAMN09420328,SAMN09420328,SAMN09420755,SAMN09421120
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1841090184_MAG63
attributes.tag: scientific_name
attributes.value: [Ruminococcus] lactaris
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach