title: TEDDY OU Gut MAG
organism: Lacticaseibacillus paracasei
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1826522975: SRR7568658,SRR7557715,SRR7563673,SRR7567872,SRR7565885,SRR7569674,SRR7559520,SRR7559238,SRR7557279,SRR7569324,SRR7562702,SRR7560361,SRR7567422,SRR7566318,SRR7563747,SRR7567932,SRR7562705,SRR7563977,SRR7564500,SRR7562631,SRR7568842,SRR7568598,SRR7569300,SRR7559990,SRR7560810,SRR7562629,SRR7557875
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:13:02Z
attributes.tag: External Id
attributes.value: SAMEA7445806
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:13:02Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1826522975_MAG40
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.34
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.65
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408526,SAMN09408726,SAMN09409158,SAMN09409340,SAMN09409544,SAMN09410118,SAMN09410967,SAMN09411006,SAMN09411077,SAMN09411188,SAMN09411309,SAMN09413574,SAMN09413575,SAMN09413634,SAMN09413891,SAMN09414154,SAMN09414155,SAMN09414689,SAMN09415221,SAMN09416615,SAMN09416995,SAMN09417211,SAMN09417431,SAMN09417585,SAMN09417902,SAMN09420613,SAMN09421204
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1826522975_MAG40
attributes.tag: scientific_name
attributes.value: Lacticaseibacillus paracasei
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach