title: TEDDY OU Gut MAG
organism: Alistipes onderdonkii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1949420417: SRR7560789,SRR7566392,SRR7564242,SRR7568189,SRR7569277,SRR7567958,SRR7569159,SRR7564770,SRR7558916,SRR7565729,SRR7561505,SRR7565382,SRR7564172,SRR7560559,SRR7566476,SRR7568390,SRR7563475,SRR7567385,SRR7562596,SRR7558337,SRR7564503,SRR7562380,SRR7560194,SRR7556777,SRR7557274,SRR7558379,SRR7564521,SRR7564371,SRR7557384,SRR7565950,SRR7563103,SRR7567650,SRR7565613,SRR7562931,SRR7561611,SRR7565696,SRR7566648,SRR7563096,SRR7566470,SRR7561901
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T11:03:18Z
attributes.tag: External Id
attributes.value: SAMEA7449168
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T11:03:18Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1949420417_MAG16
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.00
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.44
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408061,SAMN09408259,SAMN09408670,SAMN09409119,SAMN09409349,SAMN09410160,SAMN09410443,SAMN09410838,SAMN09411949,SAMN09412006,SAMN09412024,SAMN09412317,SAMN09412678,SAMN09412773,SAMN09413704,SAMN09413991,SAMN09414036,SAMN09414083,SAMN09414537,SAMN09414573,SAMN09414844,SAMN09415190,SAMN09415388,SAMN09415505,SAMN09416118,SAMN09416296,SAMN09416468,SAMN09416565,SAMN09416628,SAMN09418242,SAMN09418256,SAMN09418267,SAMN09418731,SAMN09419115,SAMN09419549,SAMN09419602,SAMN09419812,SAMN09420361,SAMN09420535,SAMN09421039
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1949420417_MAG16
attributes.tag: scientific_name
attributes.value: Alistipes onderdonkii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach