title: TEDDY OU Gut MAG
organism: Enterococcus avium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1950891337: SRR7564133,SRR7557174,SRR7565825,SRR7560171,SRR7563509,SRR7569332,SRR7569426,SRR7568119,SRR7560802,SRR7556864,SRR7568643,SRR7561249,SRR7569214,SRR7560785,SRR7558103,SRR7564882,SRR7568954,SRR7559109,SRR7569942,SRR7568659,SRR7566096,SRR7567801,SRR7561416,SRR7556772,SRR7567188
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T11:03:56Z
attributes.tag: External Id
attributes.value: SAMEA7449208
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T11:03:56Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1950891337_MAG23
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.94
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 4.24
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408286,SAMN09408335,SAMN09409186,SAMN09409762,SAMN09409859,SAMN09410122,SAMN09410282,SAMN09410311,SAMN09410761,SAMN09410904,SAMN09412371,SAMN09413536,SAMN09414501,SAMN09415060,SAMN09415127,SAMN09417596,SAMN09417763,SAMN09418197,SAMN09418270,SAMN09418759,SAMN09419245,SAMN09419351,SAMN09419368,SAMN09419837,SAMN09420949
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1950891337_MAG23
attributes.tag: scientific_name
attributes.value: Enterococcus avium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach