title: TEDDY OU Gut MAG
organism: uncultured Ruminococcus sp.
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1816463381: SRR7559776,SRR7557943,SRR7557662,SRR7557530,SRR7561713,SRR7560255,SRR7566926,SRR7564532,SRR7556992,SRR7559142,SRR7560862,SRR7559106,SRR7566743,SRR7568336,SRR7565461,SRR7560033,SRR7565527,SRR7561064,SRR7569777
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:07:20Z
attributes.tag: External Id
attributes.value: SAMEA7445451
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:07:20Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1816463381_MAG39
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 90.84
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.65
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408920,SAMN09410285,SAMN09410289,SAMN09410339,SAMN09410370,SAMN09411136,SAMN09411932,SAMN09413244,SAMN09414151,SAMN09414230,SAMN09414398,SAMN09415203,SAMN09415709,SAMN09415976,SAMN09416064,SAMN09419069,SAMN09419955,SAMN09420492,SAMN09420594
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1816463381_MAG39
attributes.tag: scientific_name
attributes.value: uncultured Ruminococcus sp.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach