title: TEDDY OU Gut MAG
organism: Akkermansia muciniphila
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1822325385: SRR7556824,SRR7569115,SRR7568037,SRR7559806,SRR7569971,SRR7563536,SRR7564650,SRR7564053,SRR7562354,SRR7563048,SRR7566849,SRR7563419,SRR7557536,SRR7568807,SRR7564648,SRR7567870,SRR7556809,SRR7564238,SRR7559059,SRR7560445,SRR7565088,SRR7565087,SRR7564640,SRR7562738,SRR7566287,SRR7569666,SRR7560468,SRR7562703,SRR7562257,SRR7565482,SRR7565358
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:10:50Z
attributes.tag: External Id
attributes.value: SAMEA7445671
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:10:50Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1822325385_MAG49
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 93.20
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408037,SAMN09408069,SAMN09408133,SAMN09408151,SAMN09408233,SAMN09408540,SAMN09409307,SAMN09409315,SAMN09409644,SAMN09410006,SAMN09411565,SAMN09412303,SAMN09412529,SAMN09413524,SAMN09414081,SAMN09416256,SAMN09416755,SAMN09416757,SAMN09417012,SAMN09417035,SAMN09417751,SAMN09417751,SAMN09418280,SAMN09418366,SAMN09418538,SAMN09418836,SAMN09419859,SAMN09419882,SAMN09420856,SAMN09420885,SAMN09421190
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1822325385_MAG49
attributes.tag: scientific_name
attributes.value: Akkermansia muciniphila
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach