title: TEDDY OU Gut MAG
organism: [Ruminococcus] lactaris
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1901483788: SRR7566985,SRR7565404,SRR7563106,SRR7566626,SRR7561616,SRR7559469,SRR7563443,SRR7562396,SRR7566558,SRR7567781,SRR7569992,SRR7567694,SRR7556847,SRR7565340,SRR7562266,SRR7559087,SRR7561158,SRR7564546,SRR7557030,SRR7568831,SRR7560891,SRR7563671,SRR7556808,SRR7563312,SRR7557229,SRR7562126,SRR7561598
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:46:18Z
attributes.tag: External Id
attributes.value: SAMEA7447893
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:46:18Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1901483788_MAG4
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.20
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.19
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408030,SAMN09408152,SAMN09408226,SAMN09411419,SAMN09411513,SAMN09412378,SAMN09412431,SAMN09412693,SAMN09412721,SAMN09412755,SAMN09414112,SAMN09414144,SAMN09414703,SAMN09415267,SAMN09415288,SAMN09415979,SAMN09416002,SAMN09417691,SAMN09418644,SAMN09418839,SAMN09418895,SAMN09418929,SAMN09419421,SAMN09419628,SAMN09420377,SAMN09420436,SAMN09420877
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1901483788_MAG4
attributes.tag: scientific_name
attributes.value: [Ruminococcus] lactaris
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach