title: TEDDY OU Gut MAG
organism: Mediterraneibacter gnavus
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1940973217: SRR7568311,SRR7568312,SRR7566560,SRR7561007,SRR7567444,SRR7567443,SRR7560441,SRR7561369,SRR7556854,SRR7560499,SRR7560250,SRR7564666,SRR7564665,SRR7564667,SRR7567561,SRR7559828,SRR7568622,SRR7568623,SRR7568621
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:59:09Z
attributes.tag: External Id
attributes.value: SAMEA7448908
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:59:09Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1940973217_MAG74
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.83
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.19
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409661,SAMN09409661,SAMN09410671,SAMN09410851,SAMN09412607,SAMN09412607,SAMN09414024,SAMN09414143,SAMN09414909,SAMN09414936,SAMN09415066,SAMN09415931,SAMN09415931,SAMN09415931,SAMN09417541,SAMN09420121,SAMN09420814,SAMN09420814,SAMN09420814
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1940973217_MAG74
attributes.tag: scientific_name
attributes.value: [Ruminococcus] gnavus
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach