title: TEDDY OU Gut MAG
organism: Sellimonas intestinalis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1897696505: SRR7562312,SRR7562311,SRR7564604,SRR7564346,SRR7569043,SRR7564823,SRR7564822,SRR7569172,SRR7569173,SRR7565402,SRR7568945,SRR7557140,SRR7569841,SRR7569840,SRR7565955,SRR7561746,SRR7561745,SRR7561275,SRR7565998,SRR7563717,SRR7562426,SRR7562425,SRR7558255,SRR7558254,SRR7563691,SRR7563690,SRR7567020,SRR7558026,SRR7558027,SRR7557591,SRR7559365,SRR7559364,SRR7565153,SRR7559191,SRR7559192,SRR7568386,SRR7568387,SRR7564262,SRR7564261,SRR7564263,SRR7562177
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:43:22Z
attributes.tag: External Id
attributes.value: SAMEA7447711
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:43:22Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1897696505_MAG3
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.46
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.36
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408961,SAMN09408961,SAMN09409014,SAMN09409211,SAMN09409678,SAMN09410070,SAMN09410070,SAMN09410385,SAMN09410385,SAMN09410534,SAMN09411995,SAMN09412930,SAMN09413226,SAMN09413226,SAMN09413294,SAMN09414371,SAMN09414371,SAMN09415991,SAMN09416112,SAMN09416292,SAMN09416337,SAMN09416337,SAMN09416476,SAMN09416476,SAMN09416487,SAMN09416487,SAMN09417663,SAMN09418199,SAMN09418199,SAMN09418254,SAMN09418328,SAMN09418328,SAMN09419389,SAMN09419392,SAMN09419392,SAMN09420115,SAMN09420115,SAMN09420356,SAMN09420356,SAMN09420356,SAMN09420937
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1897696505_MAG3
attributes.tag: scientific_name
attributes.value: Sellimonas intestinalis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach