title: TEDDY OU Gut MAG
organism: Bifidobacterium pseudocatenulatum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1611641264: SRR7563813,SRR7567652,SRR7566251,SRR7556911,SRR7558572,SRR7557382,SRR7563244,SRR7560336,SRR7567206,SRR7561662,SRR7569543,SRR7565131,SRR7567006,SRR7566003,SRR7566938,SRR7563742,SRR7567647,SRR7566387,SRR7561229,SRR7567351,SRR7560237
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T08:45:42Z
attributes.tag: External Id
attributes.value: SAMEA7440292
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T08:45:42Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1611641264_MAG1
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 91.68
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.37
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408262,SAMN09408613,SAMN09408650,SAMN09408699,SAMN09409311,SAMN09409375,SAMN09411518,SAMN09411814,SAMN09412648,SAMN09412896,SAMN09413643,SAMN09414508,SAMN09415112,SAMN09415451,SAMN09415887,SAMN09415994,SAMN09417515,SAMN09417857,SAMN09418796,SAMN09419889,SAMN09420641
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1611641264_MAG1
attributes.tag: scientific_name
attributes.value: Bifidobacterium pseudocatenulatum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach