title: TEDDY OU Gut MAG
organism: Ruminococcus bromii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1954121241: SRR7566264,SRR7561891,SRR7568153,SRR7559344,SRR7561654,SRR7561889,SRR7566363,SRR7566364,SRR7569158,SRR7569157,SRR7560246,SRR7566958,SRR7564497,SRR7568798,SRR7568499,SRR7563371,SRR7568060,SRR7568061
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T11:05:46Z
attributes.tag: External Id
attributes.value: SAMEA7449321
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:59Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T11:05:46Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1954121241_MAG35
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.99
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.01
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408058,SAMN09408485,SAMN09408804,SAMN09411730,SAMN09412628,SAMN09413403,SAMN09413518,SAMN09413518,SAMN09413616,SAMN09413616,SAMN09414002,SAMN09414044,SAMN09414686,SAMN09414994,SAMN09418954,SAMN09419294,SAMN09419969,SAMN09419969
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1954121241_MAG35
attributes.tag: scientific_name
attributes.value: Ruminococcus bromii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach