title: TEDDY OU Gut MAG
organism: Enterococcus faecalis
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1834178900: SRR7565917,SRR7560041,SRR7568450,SRR7564089,SRR7561405,SRR7566215,SRR7561864,SRR7567359,SRR7560146,SRR7558209,SRR7562135,SRR7564491,SRR7558985,SRR7561772,SRR7564151,SRR7557753,SRR7556819,SRR7560884,SRR7561847,SRR7558779,SRR7567655,SRR7562561,SRR7569009,SRR7558063,SRR7564522,SRR7560178,SRR7565516,SRR7568286,SRR7562875,SRR7568443,SRR7568112
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:08Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:18:09Z
attributes.tag: External Id
attributes.value: SAMEA7446128
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:08Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:18:09Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1834178900_MAG80
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.66
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.22
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408506,SAMN09408988,SAMN09409732,SAMN09409737,SAMN09411101,SAMN09411905,SAMN09411921,SAMN09412537,SAMN09414233,SAMN09414669,SAMN09414685,SAMN09414913,SAMN09414916,SAMN09414942,SAMN09415085,SAMN09415318,SAMN09415342,SAMN09415567,SAMN09415873,SAMN09416096,SAMN09416322,SAMN09416654,SAMN09417731,SAMN09418887,SAMN09419359,SAMN09419384,SAMN09419816,SAMN09420591,SAMN09420728,SAMN09420751,SAMN09420864
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1834178900_MAG80
attributes.tag: scientific_name
attributes.value: Enterococcus faecalis
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach