title: TEDDY OU Gut MAG
organism: Alistipes onderdonkii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1867634179: SRR7560005,SRR7559423,SRR7561033,SRR7564627,SRR7560109,SRR7563376,SRR7569148,SRR7563474,SRR7560600,SRR7558720,SRR7559852,SRR7560995,SRR7559280,SRR7569849,SRR7564440,SRR7566214,SRR7561516,SRR7560707,SRR7565271,SRR7567210,SRR7567201,SRR7563978,SRR7568809,SRR7561874,SRR7563360,SRR7568947,SRR7560236,SRR7558398,SRR7560705
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:32:12Z
attributes.tag: External Id
attributes.value: SAMEA7447019
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:32:12Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1867634179_MAG67
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96.67
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 1.44
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408428,SAMN09408880,SAMN09409244,SAMN09409529,SAMN09409790,SAMN09410500,SAMN09410896,SAMN09410989,SAMN09411274,SAMN09411399,SAMN09412400,SAMN09413474,SAMN09414179,SAMN09414449,SAMN09414678,SAMN09414888,SAMN09415772,SAMN09415829,SAMN09416909,SAMN09417713,SAMN09418566,SAMN09418846,SAMN09418945,SAMN09418986,SAMN09419503,SAMN09420244,SAMN09420939,SAMN09421107,SAMN09421108
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1867634179_MAG67
attributes.tag: scientific_name
attributes.value: Alistipes onderdonkii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach