title: TEDDY OU Gut MAG
organism: Oscillospiraceae bacterium
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1913333238: SRR7567480,SRR7561795,SRR7556957,SRR7564574,SRR7562350,SRR7566057,SRR7567881,SRR7569164,SRR7569465,SRR7569737,SRR7558214,SRR7563123,SRR7569321,SRR7558749
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: collection date
attributes.value: not provided
attributes.tag: sample derived from
attributes.value: SAMN09408140,SAMN09408607,SAMN09408714,SAMN09409117,SAMN09410465,SAMN09410953,SAMN09412302,SAMN09413459,SAMN09415842,SAMN09416277,SAMN09416962,SAMN09418181,SAMN09418524,SAMN09420026
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: contamination score
attributes.value: 0.34
attributes.tag: host sex
attributes.value: female
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:00Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:49:07Z
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: organism
attributes.value: Ruminococcaceae bacterium
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: completeness score
attributes.value: 96.64
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: scientific_name
attributes.value: Ruminococcaceae bacterium
attributes.tag: common name
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: isolation_source
attributes.value: human gut
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15