title: TEDDY OU Gut MAG
organism: Lacticaseibacillus rhamnosus
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1942773417: SRR7559150,SRR7569982,SRR7569496,SRR7561797,SRR7561479,SRR7561478,SRR7566401,SRR7559076,SRR7560827,SRR7569684,SRR7560238,SRR7569810,SRR7567424,SRR7567423,SRR7563135,SRR7563134,SRR7556942,SRR7565631,SRR7565632
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T11:00:16Z
attributes.tag: External Id
attributes.value: SAMEA7448978
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T11:00:16Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1942773417_MAG31
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.12
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.05
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409136,SAMN09409374,SAMN09409979,SAMN09410028,SAMN09410359,SAMN09410359,SAMN09411908,SAMN09412540,SAMN09414493,SAMN09415367,SAMN09416170,SAMN09416397,SAMN09416706,SAMN09416706,SAMN09419715,SAMN09419715,SAMN09421021,SAMN09421042,SAMN09421042
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1942773417_MAG31
attributes.tag: scientific_name
attributes.value: Lactobacillus rhamnosus
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach