title: TEDDY OU Gut MAG
organism: [Clostridium] innocuum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1867431578: SRR7564243,SRR7564244,SRR7569665,SRR7565412,SRR7559382,SRR7564710,SRR7564709,SRR7565079,SRR7569176,SRR7558192,SRR7560746,SRR7560747,SRR7569730,SRR7560282,SRR7565167,SRR7561284,SRR7559045,SRR7559044,SRR7560455,SRR7559129
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:08Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:31:43Z
attributes.tag: External Id
attributes.value: SAMEA7446987
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:08Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:31:43Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1867431578_MAG45
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.17
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409452,SAMN09409452,SAMN09409456,SAMN09409639,SAMN09409860,SAMN09410867,SAMN09410867,SAMN09411038,SAMN09412393,SAMN09412399,SAMN09413561,SAMN09413561,SAMN09414630,SAMN09414999,SAMN09415364,SAMN09417068,SAMN09418830,SAMN09418830,SAMN09420105,SAMN09421129
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1867431578_MAG45
attributes.tag: scientific_name
attributes.value: [Clostridium] innocuum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach