title: TEDDY OU Gut MAG
organism: Lacticaseibacillus paracasei
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1820119148: SRR7560091,SRR7559385,SRR7569893,SRR7561802,SRR7558436,SRR7562528,SRR7565213,SRR7562451,SRR7567126,SRR7569907,SRR7565242,SRR7557108,SRR7567337,SRR7569223,SRR7564720,SRR7557562,SRR7563829,SRR7566406,SRR7563949
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:09:50Z
attributes.tag: External Id
attributes.value: SAMEA7445609
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:09:50Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1820119148_MAG85
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.86
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408654,SAMN09411197,SAMN09411720,SAMN09411952,SAMN09412567,SAMN09412892,SAMN09412999,SAMN09413022,SAMN09413137,SAMN09413519,SAMN09414068,SAMN09415183,SAMN09415434,SAMN09415473,SAMN09417740,SAMN09417943,SAMN09418765,SAMN09419014,SAMN09419658
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1820119148_MAG85
attributes.tag: scientific_name
attributes.value: Lacticaseibacillus paracasei
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach