title: TEDDY OU Gut MAG
organism: Mediterraneibacter torques
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1938000446: SRR7560567,SRR7561227,SRR7561102,SRR7565586,SRR7564680,SRR7569427,SRR7567150,SRR7567149,SRR7568999,SRR7568998,SRR7557734,SRR7565261,SRR7556908,SRR7556909,SRR7559321,SRR7569177,SRR7558489,SRR7569082,SRR7569466,SRR7568768,SRR7568767,SRR7565610,SRR7564458,SRR7560436,SRR7560386,SRR7562212,SRR7569843,SRR7557528,SRR7557529,SRR7559053,SRR7561424,SRR7561425,SRR7567858,SRR7557003,SRR7566238,SRR7564573,SRR7561266,SRR7561267,SRR7560037
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:57:40Z
attributes.tag: External Id
attributes.value: SAMEA7448817
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:57:40Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1938000446_MAG28
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 99.24
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408402,SAMN09409009,SAMN09409039,SAMN09409511,SAMN09409715,SAMN09409820,SAMN09410565,SAMN09410565,SAMN09410805,SAMN09410805,SAMN09411201,SAMN09411760,SAMN09412463,SAMN09412463,SAMN09412789,SAMN09413064,SAMN09413953,SAMN09414868,SAMN09415011,SAMN09415196,SAMN09415196,SAMN09415481,SAMN09416330,SAMN09416727,SAMN09416753,SAMN09417353,SAMN09418179,SAMN09418271,SAMN09418271,SAMN09418388,SAMN09418589,SAMN09418589,SAMN09418867,SAMN09420457,SAMN09420603,SAMN09420943,SAMN09420977,SAMN09420977,SAMN09421068
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1938000446_MAG28
attributes.tag: scientific_name
attributes.value: [Ruminococcus] torques
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach