title: TEDDY OU Gut MAG
organism: Faecalibacterium prausnitzii
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1925311395: SRR7569199,SRR7559630,SRR7569437,SRR7561328,SRR7557136,SRR7565195,SRR7558608,SRR7567055,SRR7568859,SRR7567397,SRR7559816,SRR7562482,SRR7562128,SRR7565362,SRR7568493,SRR7569351,SRR7568525,SRR7558576,SRR7566842,SRR7561536,SRR7561375,SRR7559291,SRR7558628,SRR7561504,SRR7562134,SRR7569705,SRR7557672,SRR7569650,SRR7567018,SRR7556918
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:52:50Z
attributes.tag: External Id
attributes.value: SAMEA7448512
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:52:50Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1925311395_MAG35
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 92.89
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408289,SAMN09408834,SAMN09409341,SAMN09410106,SAMN09410558,SAMN09410766,SAMN09411723,SAMN09411850,SAMN09412498,SAMN09412824,SAMN09413512,SAMN09414222,SAMN09414462,SAMN09414651,SAMN09415110,SAMN09415341,SAMN09415688,SAMN09416169,SAMN09416480,SAMN09417226,SAMN09417363,SAMN09417632,SAMN09418668,SAMN09418870,SAMN09418967,SAMN09419605,SAMN09420448,SAMN09420862,SAMN09421127,SAMN09421201
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1925311395_MAG35
attributes.tag: scientific_name
attributes.value: Faecalibacterium prausnitzii
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach