title: TEDDY OU Gut MAG
organism: Ruminococcus bicirculans (ex Wegman et al. 2014)
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1915765223: SRR7565638,SRR7563338,SRR7564207,SRR7557585,SRR7561818,SRR7561819,SRR7563028,SRR7569752,SRR7566790,SRR7562686,SRR7560665,SRR7567966,SRR7566872,SRR7561899,SRR7563243,SRR7562040,SRR7557878,SRR7558266,SRR7558265,SRR7559755,SRR7567407,SRR7558684,SRR7569150
attributes.tag: ENA first public
attributes.value: 2021-01-30
attributes.tag: ENA last update
attributes.value: 2020-10-15
attributes.tag: External Id
attributes.value: SAMEA7448119
attributes.tag: INSDC center alias
attributes.value: Pan Lab at OU
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:09:58Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:49:54Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1915765223_MAG42
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.95
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408135,SAMN09408504,SAMN09409219,SAMN09409563,SAMN09409816,SAMN09409816,SAMN09410485,SAMN09410997,SAMN09411034,SAMN09412448,SAMN09412805,SAMN09412899,SAMN09414839,SAMN09414890,SAMN09417433,SAMN09417456,SAMN09417781,SAMN09418783,SAMN09418783,SAMN09419185,SAMN09419787,SAMN09419788,SAMN09420142
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1915765223_MAG42
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach