title: TEDDY OU Gut MAG
organism: Mediterraneibacter torques
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1853558835: SRR7559177,SRR7559330,SRR7569548,SRR7561469,SRR7557464,SRR7559370,SRR7569724,SRR7562577,SRR7559535,SRR7565187,SRR7558955,SRR7565646,SRR7561704,SRR7561702,SRR7568436,SRR7561535,SRR7569715,SRR7558055,SRR7567910,SRR7559880,SRR7563842,SRR7565500,SRR7563631,SRR7558307,SRR7558807,SRR7566562
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:27:28Z
attributes.tag: External Id
attributes.value: SAMEA7446717
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:07Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:27:28Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1853558835_MAG104
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 97.42
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.00
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408721,SAMN09409173,SAMN09409826,SAMN09410977,SAMN09411950,SAMN09413919,SAMN09414091,SAMN09414383,SAMN09415073,SAMN09415271,SAMN09415443,SAMN09415500,SAMN09415615,SAMN09415713,SAMN09415962,SAMN09416044,SAMN09416108,SAMN09416316,SAMN09417726,SAMN09417767,SAMN09418022,SAMN09419428,SAMN09420379,SAMN09420439,SAMN09420504,SAMN09420838
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1853558835_MAG104
attributes.tag: scientific_name
attributes.value: [Ruminococcus] torques
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach