title: TEDDY OU Gut MAG
organism: Akkermansia muciniphila
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1828768537: SRR7566557,SRR7564984,SRR7560315,SRR7561293,SRR7561190,SRR7558222,SRR7560165,SRR7562767,SRR7561363,SRR7560245,SRR7560244,SRR7567478,SRR7568539,SRR7569745,SRR7562883,SRR7561871,SRR7563045,SRR7564349,SRR7567408,SRR7557634,SRR7561169,SRR7569308,SRR7561705,SRR7567068,SRR7563356,SRR7564232,SRR7564380,SRR7566523,SRR7565147,SRR7557473,SRR7564831,SRR7562634
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:16:01Z
attributes.tag: External Id
attributes.value: SAMEA7445994
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:04Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:16:01Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1828768537_MAG62
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 95.42
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.68
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09408031,SAMN09408449,SAMN09408881,SAMN09409155,SAMN09410299,SAMN09410641,SAMN09410814,SAMN09410985,SAMN09411423,SAMN09411462,SAMN09411462,SAMN09412844,SAMN09413031,SAMN09415039,SAMN09415257,SAMN09415440,SAMN09416023,SAMN09416356,SAMN09417196,SAMN09417432,SAMN09417527,SAMN09417861,SAMN09417949,SAMN09418309,SAMN09418520,SAMN09419013,SAMN09419022,SAMN09419390,SAMN09419522,SAMN09420161,SAMN09420410,SAMN09420464
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1828768537_MAG62
attributes.tag: scientific_name
attributes.value: Akkermansia muciniphila
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach