title: TEDDY OU Gut MAG
organism: Shigella flexneri
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1847520038: SRR7558126,SRR7557375,SRR7559711,SRR7563980,SRR7568111,SRR7562016,SRR7565178,SRR7557723,SRR7557833,SRR7558780,SRR7564805,SRR7560497,SRR7569309,SRR7558429
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:25:21Z
attributes.tag: External Id
attributes.value: SAMEA7446584
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:06Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:25:21Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1847520038_MAG11
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.64
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.55
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409824,SAMN09409905,SAMN09411120,SAMN09411266,SAMN09412661,SAMN09413901,SAMN09414754,SAMN09415909,SAMN09418744,SAMN09419102,SAMN09419361,SAMN09419932,SAMN09419980,SAMN09420064
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1847520038_MAG11
attributes.tag: scientific_name
attributes.value: Shigella flexneri
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach