title: TEDDY OU Gut MAG
organism: [Clostridium] leptum
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1853979633: SRR7557559,SRR7558810,SRR7557860,SRR7557539,SRR7564169,SRR7569887,SRR7569922,SRR7560625,SRR7569068,SRR7560491,SRR7563029,SRR7567985,SRR7561430,SRR7562117,SRR7566157,SRR7568870,SRR7561904,SRR7564252,SRR7565425,SRR7565867
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:01Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:28:23Z
attributes.tag: External Id
attributes.value: SAMEA7446775
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:01Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:28:23Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1853979633_MAG25
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 94.04
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.67
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: female
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409205,SAMN09409264,SAMN09409377,SAMN09409384,SAMN09409425,SAMN09409494,SAMN09409747,SAMN09409948,SAMN09410275,SAMN09411992,SAMN09413167,SAMN09413178,SAMN09414622,SAMN09414623,SAMN09415655,SAMN09416085,SAMN09417914,SAMN09418633,SAMN09419592,SAMN09419752
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1853979633_MAG25
attributes.tag: scientific_name
attributes.value: [Clostridium] leptum
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach