title: TEDDY OU Gut MAG
organism: [Ruminococcus] lactaris
description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1885874406: SRR7566129,SRR7560095,SRR7559957,SRR7569877,SRR7561349,SRR7565380,SRR7565379,SRR7567425,SRR7562065,SRR7557461,SRR7557760,SRR7557759,SRR7558870,SRR7565038,SRR7563282,SRR7563283,SRR7565069,SRR7558200,SRR7559294,SRR7563665,SRR7557923,SRR7557215,SRR7560645,SRR7560646,SRR7566732,SRR7564441
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2020-10-15T10:38:56Z
attributes.tag: External Id
attributes.value: SAMEA7447444
attributes.tag: INSDC center name
attributes.value: Pan Lab at OU
attributes.tag: INSDC first public
attributes.value: 2021-01-30T04:10:05Z
attributes.tag: INSDC last update
attributes.value: 2020-10-15T10:38:56Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: bowtie2; v2.3.5.1
attributes.tag: Submitter Id
attributes.value: TEDDY_OU_SUBJ1885874406_MAG19
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes;3.13.1;default parameters with metaSPAdes mode
attributes.tag: binning parameters
attributes.value: --minContig 2000
attributes.tag: binning software
attributes.value: MetaBAT;2.12.1
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 98.13
attributes.tag: completeness software
attributes.value: CheckM;v1.0.13
attributes.tag: contamination score
attributes.value: 0.78
attributes.tag: environment (biome)
attributes.value: human gut
attributes.tag: environment (feature)
attributes.value: human gut
attributes.tag: environment (material)
attributes.value: fecal
attributes.tag: geographic location (country and/or sea)
attributes.value: restricted access
attributes.tag: geographic location (latitude)
attributes.value: restricted access
attributes.tag: geographic location (longitude)
attributes.value: restricted access
attributes.tag: host sex
attributes.value: male
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: human gut
attributes.tag: metagenomic source
attributes.value: human gut metagenome
attributes.tag: project name
attributes.value: PRJEB40730
attributes.tag: sample derived from
attributes.value: SAMN09409320,SAMN09409376,SAMN09409533,SAMN09409858,SAMN09410054,SAMN09410578,SAMN09410578,SAMN09412225,SAMN09413361,SAMN09413472,SAMN09414013,SAMN09414013,SAMN09415818,SAMN09415918,SAMN09417126,SAMN09417126,SAMN09417436,SAMN09418445,SAMN09419225,SAMN09419337,SAMN09419603,SAMN09419894,SAMN09420049,SAMN09420049,SAMN09420150,SAMN09420228
attributes.tag: sample name
attributes.value: TEDDY_OU_SUBJ1885874406_MAG19
attributes.tag: scientific_name
attributes.value: [Ruminococcus] lactaris
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: taxonomic classification
attributes.value: GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach