organism: uncultured Eubacteriales bacterium
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2019-11-14T04:04:37Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2019-11-01T20:36:47Z
attributes.tag: External Id
attributes.value: SAMEA6153072
attributes.tag: INSDC center name
attributes.value: THE ROSLIN INSTITUTE
attributes.tag: INSDC first public
attributes.value: 2019-11-14T04:04:37Z
attributes.tag: INSDC last update
attributes.value: 2019-11-01T20:36:47Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: RUG14933
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
attributes.tag: binning parameters
attributes.value: tetra-nucleotide frequencies and abundance
attributes.tag: binning software
attributes.value: MetaBAT2
attributes.tag: collection date
attributes.value: not collected
attributes.tag: completeness score
attributes.value: 92.91
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 4.26
attributes.tag: environment (biome)
attributes.value: Bos taurus
attributes.tag: environment (feature)
attributes.value: stomach
attributes.tag: environment (material)
attributes.value: bodily fluid
attributes.tag: geographic location (country and/or sea)
attributes.value: United Kingdom
attributes.tag: geographic location (latitude)
attributes.value: 55.861398
attributes.tag: geographic location (longitude)
attributes.value: -3.206493
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: isolation source
attributes.value: cattle rumen
attributes.tag: metagenomic source
attributes.value: bovine gut metagenome
attributes.tag: project name
attributes.value: Metagenomic sequencing of the rumen of 240 cattle from Scotland
attributes.tag: reference for biomaterial
attributes.value: Stewart RD, Auffret MD, Warr A, Walker AW, Roehe R, Watson M. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery. (2019) Nat Biotechnol. 37(8):953-961. doi: 10.1038/s41587-019-0202-3.
attributes.tag: sample derived from
attributes.value: ERS3947783
attributes.tag: sample name
attributes.value: RUG14933
attributes.tag: scientific_name
attributes.value: uncultured Clostridiales bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach - MAGpy - Stewart RD, Auffret MD, Snelling TJ, Roehe R, Watson M. (2019) MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs). Bioinformatics. 35(12):2150-2152. doi: 10.1093/bioinformatics/bty905