organism: rhizosphere metagenome
description: A comparative metatranscriptomic approach was applied to assess the taxonomic and functional characteristics of the rhizosphere microbiome of wheat plants grown in adjacent fields which are suppressive and non-suppressive for phytopathogen Rhizoctonia solani AG8.
attributes.tag: collection_date
attributes.value: 2012-07-31
attributes.tag: depth
attributes.value: 10 cm
attributes.tag: elev
attributes.value: 34.2 m
attributes.tag: env_biome
attributes.value: agricultural field
attributes.tag: env_feature
attributes.value: wheat field
attributes.tag: env_material
attributes.value: rhizosphere soil
attributes.tag: geo_loc_name
attributes.value: Australia: Avon, South Australia
attributes.tag: lat_lon
attributes.value: 34.23981 S 138.31335 E
attributes.tag: annual_season_precpt
attributes.value: 263 mm
attributes.tag: crop_rotation
attributes.value: wheat, barley, oats for last 4 years
attributes.tag: cur_land_use
attributes.value: small grains
attributes.tag: cur_vegetation
attributes.value: agricultural crop
attributes.tag: horizon
attributes.value: A horizon
attributes.tag: isolation_source
attributes.value: wheat roots
attributes.tag: local_class
attributes.value: Lithocalcic Calcarosol
attributes.tag: local_class_meth
attributes.value: Isbell, R.F. 2002 The Australian Soil Classification. Melbourne, CSIRO Publishing.
attributes.tag: ph
attributes.value: 8
attributes.tag: ph_meth
attributes.value: pHCaCl
attributes.tag: previous_land_use
attributes.value: dryland cropping
attributes.tag: samp_collect_device
attributes.value: spade
attributes.tag: samp_mat_process
attributes.value: MoBio Lifeguard soil RNA preservation solution
attributes.tag: samp_size
attributes.value: 2 kg
attributes.tag: samp_vol_we_dna_ext
attributes.value: 2 g
attributes.tag: source_material_id
attributes.value: AV160
attributes.tag: store_cond
attributes.value: stored -20°C, extracted within 6 months
attributes.tag: tillage
attributes.value: drill
attributes.tag: tot_n_meth
attributes.value: Rayment & Lyons 7A2b
attributes.tag: tot_nitro
attributes.value: 0.052
attributes.tag: tot_org_c_meth
attributes.value: Rayment & Lyons 6A1 (Walkley & Black)
attributes.tag: tot_org_carb
attributes.value: 1.10%
attributes.tag: BioSampleModel
attributes.value: MIMS.me
attributes.tag: BioSampleModel
attributes.value: MIGS/MIMS/MIMARKS.soil