title: PoPch1
organism: Vitis vinifera
description: Protocols: 2cm wood chunks were cut and snap-frozen in liquid Nitrogen untill used. Wood pieces were ground in liquid nitrogen using a a Tissue LyserII (Qiagen). Resulting powder was stored at -80AC until RNA extraction. RNA was extracted from 200 mg powder using a Qiagen RNeasy Plant Mini Kit. RNA libraries were prepared for sequencing using standard Illumina protocols. A TruSeq Stranded Total RNA with Ribo-Zero Plant kit was used.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2015-10-23T17:01:28Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2018-03-09T09:21:27Z
attributes.tag: External Id
attributes.value: SAMEA3598472
attributes.tag: INSDC center name
attributes.value: INRA, UMR1065 Sante et Agroecologie du Vignoble (SAVE), ISVV, 33883 Villenave dOrnon, France
attributes.tag: INSDC first public
attributes.value: 2015-10-23T17:01:28Z
attributes.tag: INSDC last update
attributes.value: 2018-03-09T09:21:27Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: E-MTAB-3966:PoPch1
attributes.tag: biological replicate
attributes.value: 1
attributes.tag: broker name
attributes.value: ArrayExpress
attributes.tag: common name
attributes.value: wine grape
attributes.tag: development stage
attributes.value: 2 month old plantlets
attributes.tag: organism part
attributes.value: wood chunk
attributes.tag: sample name
attributes.value: E-MTAB-3966:PoPch1
attributes.tag: scientific_name
attributes.value: Vitis vinifera
attributes.tag: treatment
attributes.value: Phaeomoniella chlamydospora wood infection AND Pythium oligandrum root inoculation
attributes.tag: cultivar
attributes.value: Cabernet Sauvignon