title: Grandidierella japonica transcriptome control-02 20180401
organism: Grandidierella japonica
description: The estuarine and marine amphipod Grandidierella japonica has been used for sediment toxicity assessments. To understand the toxic mechanisms of road runoff, we performed de novo transcriptome analysis of G. japonica exposed to the dust deposited on road surfaces for 4 days. Transcriptome sequencing was performed by using TruSeq RNA Sample Prep Kit v2 and Illumina Hiseq 2500. Adapter sequences and low quality bases were removed by using Trimmomatic (ver. 0.36). This sample (GJAP1804011) corresponds to the RNA sample of the amphipod under control condition (replicate #2).
attributes.tag: sample_name
attributes.value: GJAP1804012
attributes.tag: biomaterial_provider
attributes.value: Environmental Risk Management and Quality Control Technology Lab, The University of Tokyo
attributes.tag: collection_date
attributes.value: 2018-02-11
attributes.tag: dev_stage
attributes.value: juvenile
attributes.tag: env_biome
attributes.value: aquatic biome [ENVO_00002030]
attributes.tag: env_feature
attributes.value: tidal mudflat [ENVO_00000241]
attributes.tag: env_material
attributes.value: water
attributes.tag: estimated_size
attributes.value: missing
attributes.tag: geo_loc_name
attributes.value: Japan:Tokyo
attributes.tag: health_state
attributes.value: control
attributes.tag: isol_growth_condt
attributes.value: 10.2166/wst.2015.304
attributes.tag: isolate
attributes.value: missing
attributes.tag: lat_lon
attributes.value: 35.712778 N 139.761944 E
attributes.tag: propagation
attributes.value: sexual
attributes.tag: replicate
attributes.value: biological replicate 2
attributes.tag: tissue_type
attributes.value: whole body