organism: uncultured Pelagibacteraceae bacterium
description: This sample represents a single-cell amplified genome from the environmental sample ERS4140169
attributes.tag: ENA first public
attributes.value: 2021-04-08
attributes.tag: ENA last update
attributes.value: 2021-04-07
attributes.tag: External Id
attributes.value: SAMEA8535492
attributes.tag: INSDC center alias
attributes.value: UNIVERSITY OF VIENNA
attributes.tag: INSDC center name
attributes.value: UNIVERSITY OF VIENNA
attributes.tag: INSDC first public
attributes.value: 2021-04-08T00:38:30Z
attributes.tag: INSDC last update
attributes.value: 2021-04-07T15:13:58Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: RIS_SAG_21
attributes.tag: WGA amplification approach
attributes.value: mda based
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: SPAdes
attributes.tag: collection date
attributes.value: 2017-12
attributes.tag: completeness score
attributes.value: 56
attributes.tag: completeness software
attributes.value: CheckM v.1.0.7
attributes.tag: contamination score
attributes.value: 0
attributes.tag: environment (biome)
attributes.value: ENVO:01000048
attributes.tag: environment (feature)
attributes.value: ENVO:00000015
attributes.tag: environment (material)
attributes.value: ENVO:00002149
attributes.tag: geographic location (country and/or sea)
attributes.value: Antarctica
attributes.tag: geographic location (latitude)
attributes.value: 80.65767 S
attributes.tag: geographic location (longitude)
attributes.value: 174.46263 W
attributes.tag: investigation type
attributes.value: single amplified genome
attributes.tag: isolation source
attributes.value: Ocean cavity beneath Ross Ice Shelf
attributes.tag: metagenomic source
attributes.value: marine metagenome
attributes.tag: project name
attributes.value: PRJEB35712
attributes.tag: sample derived from
attributes.value: ERS4140169
attributes.tag: sample name
attributes.value: RIS_SAG_21
attributes.tag: sequencing method
attributes.value: Illumina NextSeq 500
attributes.tag: single cell or viral particle lysis approach
attributes.value: combination
attributes.tag: sorting technology
attributes.value: flow cytometric cell sorting
attributes.tag: taxonomic identity marker
attributes.value: Genome Taxonomy Database classifier (120 protein markers)