organism: uncultured bacterium
description: Cattle rumen microbiome bin 10677_0046_idba_bin.84
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2019-08-09T17:04:01Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2019-07-31T16:26:06Z
attributes.tag: External Id
attributes.value: SAMEA5826603
attributes.tag: INSDC center name
attributes.value: THE ROSLIN INSTITUTE
attributes.tag: INSDC first public
attributes.value: 2019-08-09T17:04:01Z
attributes.tag: INSDC last update
attributes.value: 2019-07-31T16:26:06Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: 10677_0046_idba_bin.84
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: IDBA-UD; v1.1.3; --num_threads 16 --pre_correction --min_contig 300
attributes.tag: binning parameters
attributes.value: tetra-nucleotide frequencies and abundance
attributes.tag: binning software
attributes.value: MetaBAT2
attributes.tag: collection date
attributes.value: not collected
attributes.tag: completeness score
attributes.value: 52.74
attributes.tag: completeness software
attributes.value: checkm
attributes.tag: contamination score
attributes.value: 0
attributes.tag: environment (biome)
attributes.value: Bos taurus
attributes.tag: environment (feature)
attributes.value: stomach
attributes.tag: environment (material)
attributes.value: bodily fluid
attributes.tag: geographic location (country and/or sea)
attributes.value: United Kingdom
attributes.tag: geographic location (latitude)
attributes.value: 55.861398
attributes.tag: geographic location (longitude)
attributes.value: -3.206493
attributes.tag: investigation type
attributes.value: metagenome
attributes.tag: isolation source
attributes.value: cattle rumen
attributes.tag: metagenomic source
attributes.value: bovine gut metagenome
attributes.tag: project name
attributes.value: Metagenomic sequencing of the rumen of 240 cattle from Scotland
attributes.tag: sample derived from
attributes.value: ERS3190350
attributes.tag: sample name
attributes.value: 10677_0046_idba_bin.84
attributes.tag: scientific_name
attributes.value: uncultured bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach (checkm)