description: Annotated genome assembly of Diatraea saccharalis. Hifiasm used with HiFi read data set followed by haplotig removal. Error correction using the Freebayes route. Hi-C used to produce chromosome level assembly with manual curation. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. Unknown sex single individual used for PacBio CLR and, HiFi and Hi-C. Sourced on 03.25.2020; USA; 700 Chesterfield Pwky W Chesterfield, MO 63017 (Bayer)
attributes.tag: ENA first public
attributes.value: 2022-06-14
attributes.tag: ENA last update
attributes.value: 2022-06-14
attributes.tag: External Id
attributes.value: SAMEA10332734
attributes.tag: INSDC center alias
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC center name
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC first public
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC last update
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: Diatraea_saccharalis_genome
attributes.tag: collection date
attributes.value: 2020
attributes.tag: common name
attributes.value: sugarcane borer
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: sample name
attributes.value: Diatraea_saccharalis_genome