description: Annotated genome assembly of Phaedon cochleariae. HiFi data assembled using Hifiasm. Haplotigs purged. Freebayes route used for error correction with Hi-C data and Hi-C used to produce chromosome level assembly with juicer/3d-dna. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Sample taken on 01.02.1961; UK; England (Rothamsted Experimental Station)
attributes.tag: ENA first public
attributes.value: 2022-06-14
attributes.tag: ENA last update
attributes.value: 2022-06-14
attributes.tag: External Id
attributes.value: SAMEA10332735
attributes.tag: INSDC center alias
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC center name
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC first public
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC last update
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: Phaedon cochleariae_genome
attributes.tag: collection date
attributes.value: 1961
attributes.tag: common name
attributes.value: mustard beetle
attributes.tag: geographic location (country and/or sea)
attributes.value: United Kingdom
attributes.tag: sample name
attributes.value: Phaedon cochleariae_genome