description: Annotated genome of Nezara viridula from the Pest Genomics Initiative. Single individual CLR Nezara viridula genome assembly using Falcon with haplotig removal. Manual curation and Hi-C to scaffold to chromosome level. Pilon used for error correction so may be some minor gains using freebayes to update. The result was a very good assembly. Additional RNA-seq data would benefit the annotation and improve further. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. PacBio CLR reads for the Nezara viridula genome. Unknown sex individual taken for CLR PacBio and 10X, multi-individual for Hi-C sequencing. Insecticide suseptible individuals.
attributes.tag: ENA first public
attributes.value: 2022-06-14
attributes.tag: ENA last update
attributes.value: 2022-06-14
attributes.tag: External Id
attributes.value: SAMEA10332717
attributes.tag: INSDC center alias
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC center name
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC first public
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC last update
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: Nezara_viridula_genome
attributes.tag: collection date
attributes.value: 2008
attributes.tag: common name
attributes.value: southern green stink bug
attributes.tag: geographic location (country and/or sea)
attributes.value: France
attributes.tag: sample name
attributes.value: Nezara_viridula_genome