description: Genome assembly Spiroplasma endosymbiont of Phyllotreta cruciferae. HiFiasm used to assemble HiFi reads and haplotigs purged. Manual curation and Hi-C to bring to chromosome level. HiFiasm does produce complete chromosome haplotigs for many of the chromosomes for this species, as it's a small genome. Suggest future update to would be to rerun haplotig assembly software like hifiasm or others and reannotate haplotype version. Single primary sequence assembly, not haplotype assembled. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Mixed sample with Phyllotreta striolata but one individual taken that is correct species. Taken from Canada in September 2020.
attributes.tag: ENA first public
attributes.value: 2022-06-14
attributes.tag: ENA last update
attributes.value: 2022-06-14
attributes.tag: External Id
attributes.value: SAMEA10589438
attributes.tag: INSDC center alias
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC center name
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC first public
attributes.value: 2022-06-14T00:18:16Z
attributes.tag: INSDC last update
attributes.value: 2022-06-14T00:18:16Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: Spiroplasma_endosymbiont_of_Phyllotreta_cruciferae
attributes.tag: collection date
attributes.value: 2020
attributes.tag: geographic location (country and/or sea)
attributes.value: Canada
attributes.tag: sample name
attributes.value: Spiroplasma_endosymbiont_of_Phyllotreta_cruciferae