description: Annotated genome assembly of Aphis gossypii from the Pest Genomics Initiative. Multi-individual but clonal so only 2 haplotypes observed when snp/indel calling so potentially equivalent to single individual data. Resulting Falcon assembly were separated to two species using Aphis gossypii Illumina mapping. Haplotig removal and manual curation. Hi-C used to scaffold to chromosome level. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. Multi-individual taken for CLR PacBio (contaminated with myzus persicae) and multi-individual for Hi-C and 10X illumina sequencing. Bayer culture since 2001, collected from cucumber greehouse in Hohenheim Germany.
attributes.tag: ENA first public
attributes.value: 2022-06-14
attributes.tag: ENA last update
attributes.value: 2022-06-14
attributes.tag: External Id
attributes.value: SAMEA10332731
attributes.tag: INSDC center alias
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC center name
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC first public
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC last update
attributes.value: 2022-06-14T00:18:13Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: Aphis_gossypii_genome
attributes.tag: collection date
attributes.value: 2001
attributes.tag: common name
attributes.value: cotton aphid
attributes.tag: geographic location (country and/or sea)
attributes.value: Germany
attributes.tag: sample name
attributes.value: Aphis_gossypii_genome