description: Annotated genome assembly of Chrysodeixis includens. Nanopore and 10X Illumina data from the same individual used by MaSuRCA with Hi-C data to scaffold to chromosome level. Freebayes route used to correct the genome. Suggest to improve would be to reassemble using corrected nanopore reads and try error correcting using low coverage HiFi data from another individual. Initial test looked promising to improve repeat representation due to nanopore errors and collapsing in these regions. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. Unknown sex individual taken for nanopore, 10X Illumina, and multi-individual for Hi-C sequencing (Arima kit). 1988 from South Carolina USA. More recent collections from Athens, Georgia, USA.
attributes.tag: ENA first public
attributes.value: 2022-06-14
attributes.tag: ENA last update
attributes.value: 2022-06-14
attributes.tag: External Id
attributes.value: SAMEA6847584
attributes.tag: INSDC center alias
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC center name
attributes.value: ROTHAMSTED RESEARCH
attributes.tag: INSDC first public
attributes.value: 2022-06-14T00:17:31Z
attributes.tag: INSDC last update
attributes.value: 2022-06-14T00:17:31Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: Chrysodeixis_includens_v2
attributes.tag: common name
attributes.value: soybean looper
attributes.tag: sample name
attributes.value: Chrysodeixis_includens_v2