description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1864492 of study ERP021849.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2022-08-09T16:29:48Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2022-08-09T16:29:48Z
attributes.tag: External Id
attributes.value: SAMEA110587022
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-08-09T16:29:48Z
attributes.tag: INSDC last update
attributes.value: 2022-08-09T16:29:48Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERR1864492_bin.1_metaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metaWRAP v1.3
attributes.tag: broad-scale environmental context
attributes.value: Rainbow trout digestive system
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2013-04-30
attributes.tag: completeness score
attributes.value: 85.26
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.38
attributes.tag: environmental medium
attributes.value: Gut content
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 45.68
attributes.tag: geographic location (longitude)
attributes.value: 111.05
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: fish gut metagenome
attributes.tag: local environmental context
attributes.value: Gut
attributes.tag: metagenomic source
attributes.value: fish gut metagenome
attributes.tag: project name
attributes.value: Rainbow trout is an important aquaculture species. Feeding alternative diet to replace the conventional fishmeal diet has been the focus in aquaculture nutrition. This study investigates the effect of two alternative diets on the GIT of rainbow trout raised in a cultured environment.
attributes.tag: sample derived from
attributes.value: SAMEA102931918
attributes.tag: sample name
attributes.value: ERR1864492_bin.1_metaWRAP_v1.3_MAG
attributes.tag: scientific_name
attributes.value: uncultured Mycoplasmataceae bacterium
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__;s__
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach