description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2134650 of study SRP061731.
attributes.tag: ENA first public
attributes.value: 2022-04-26
attributes.tag: ENA last update
attributes.value: 2022-04-26
attributes.tag: External Id
attributes.value: SAMEA14251169
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-04-26T16:22:07Z
attributes.tag: INSDC last update
attributes.value: 2022-04-26T16:22:07Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR2134650_bin.63_metaWRAP_v1.1_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.14.1
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metaWRAP v1.1
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: 2012-11-29
attributes.tag: completeness score
attributes.value: 91.93
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.0
attributes.tag: environment (biome)
attributes.value: Chicken digestive system
attributes.tag: environment (feature)
attributes.value: Digestive tube
attributes.tag: environment (material)
attributes.value: Cecum
attributes.tag: geographic location (country and/or sea)
attributes.value: Malaysia
attributes.tag: geographic location (latitude)
attributes.value: 2.999988
attributes.tag: geographic location (longitude)
attributes.value: 101.72307
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: chicken gut metagenome
attributes.tag: metagenomic source
attributes.value: chicken gut metagenome
attributes.tag: project name
attributes.value: To evaluate the effects of feeding prebiotic, probiotic and synbiotic on the functional potential of caecal microbiome
attributes.tag: sample derived from
attributes.value: SAMN03938737
attributes.tag: sample name
attributes.value: SRR2134650_bin.63_metaWRAP_v1.1_MAG
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2500
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach