attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2022-08-15
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2022-08-15
attributes.tag: External Id
attributes.value: SAMEA110651383
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-08-15T16:14:15Z
attributes.tag: INSDC last update
attributes.value: 2022-08-15T16:14:15Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: DRR089564_bin.1_metawrap_v1.3.0_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metawrap v1.3.0
attributes.tag: broad-scale environmental context
attributes.value: plant
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: 2015-03-30
attributes.tag: completeness score
attributes.value: 99.63
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.3
attributes.tag: environmental medium
attributes.value: rhizosphere
attributes.tag: geographic location (country and/or sea)
attributes.value: Japan
attributes.tag: geographic location (latitude)
attributes.value: 38.25
attributes.tag: geographic location (longitude)
attributes.value: 140.87
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: rhizosphere metagenome
attributes.tag: local environmental context
attributes.value: soybeen
attributes.tag: metagenomic source
attributes.value: rhizosphere metagenome
attributes.tag: project name
attributes.value: Recently, high-throughput sequencing technology is rapidly improving in quality, speed and cost. It is, therefore, becoming more widely used to study on whole bacterial communities. Rhizobial inoculation was often unsuccessful in legume fields, because soil native strains highly competed with the introduced inoculants. Conventional methods to monitor the behavior of inoculants are likely impractical and time-consuming in agricultural fields. Thus, We analyzed metagenome of the bacterial community associated with root nodules of soybean (Glycine max [L.] Merr., var. Tachinagaha) in order to descriminate the inoculant population from soil native population of soybean bradyrhizobia in an agricultural soil by mapping metagenome reads to the representative soybean bradyrhizobial genomes.
attributes.tag: sample derived from
attributes.value: SAMD00076775
attributes.tag: sample name
attributes.value: DRR089564_bin.1_metawrap_v1.3.0_MAG
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Bradyrhizobiaceae;g__Bradyrhizobium;s__Bradyrhizobium diazoefficiens
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach