description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474052 of study SRP319028.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2022-07-11
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2022-07-11
attributes.tag: External Id
attributes.value: SAMEA110322081
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-07-11T16:41:52Z
attributes.tag: INSDC last update
attributes.value: 2022-07-11T16:41:52Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR14474052_bin.15_metaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metaWRAP v1.3
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: 2019-12-01
attributes.tag: completeness score
attributes.value: 83.45
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.51
attributes.tag: environment (biome)
attributes.value: Pig digestive system
attributes.tag: environment (feature)
attributes.value: Colon
attributes.tag: environment (material)
attributes.value: Feces
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: 24.48
attributes.tag: geographic location (longitude)
attributes.value: 118.09
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: pig gut metagenome
attributes.tag: metagenomic source
attributes.value: pig gut metagenome
attributes.tag: project name
attributes.value: Analyze the bacteria and antibiotic resistance gene in pig fecal in China
attributes.tag: sample derived from
attributes.value: SAMN19078908
attributes.tag: sample name
attributes.value: SRR14474052_bin.15_metaWRAP_v1.3_MAG
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach