title: Metagenome-assembled genome: ERR3414586_bin.109_metaWRAP_v1.1_MAG
description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414586 of study ERP116122.
attributes.tag: ENA first public
attributes.value: 2022-02-16
attributes.tag: ENA last update
attributes.value: 2022-02-16
attributes.tag: External Id
attributes.value: SAMEA13008850
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-02-16T16:33:18Z
attributes.tag: INSDC last update
attributes.value: 2022-02-16T16:33:18Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: ERR3414586_bin.109_metaWRAP_v1.1_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: IDBA-UD
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metaWRAP v1.1
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 75.38
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 3.03
attributes.tag: environment (biome)
attributes.value: Chicken digestive system
attributes.tag: environment (feature)
attributes.value: Digestive tube
attributes.tag: environment (material)
attributes.value: Cecum
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation source
attributes.value: chicken gut metagenome
attributes.tag: metagenomic source
attributes.value: chicken gut metagenome
attributes.tag: project name
attributes.value: We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.
attributes.tag: sample derived from
attributes.value: SAMEA5754835
attributes.tag: sample name
attributes.value: ERR3414586_bin.109_metaWRAP_v1.1_MAG
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach