title: Metagenome-assembled genome: SRR11489786_bin.52_metaWRAP_v1.3_MAG
description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11489786 of study SRP118553.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2022-07-25
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2022-07-25
attributes.tag: External Id
attributes.value: SAMEA110412059
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-07-25T20:32:50Z
attributes.tag: INSDC last update
attributes.value: 2022-07-25T20:32:50Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR11489786_bin.52_metaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metaWRAP v1.3
attributes.tag: broad-scale environmental context
attributes.value: Pig digestive system
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: 2017-03-05
attributes.tag: completeness score
attributes.value: 51.63
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 2.94
attributes.tag: environmental medium
attributes.value: Gut content
attributes.tag: geographic location (country and/or sea)
attributes.value: China
attributes.tag: geographic location (latitude)
attributes.value: 30.3
attributes.tag: geographic location (longitude)
attributes.value: 103.0
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: pig gut metagenome
attributes.tag: local environmental context
attributes.value: Intestine
attributes.tag: metagenomic source
attributes.value: pig gut metagenome
attributes.tag: project name
attributes.value: Find the difference of gut microbial community structure and function diversity under LDA exposure
attributes.tag: sample derived from
attributes.value: SAMN14543222
attributes.tag: sample name
attributes.value: SRR11489786_bin.52_metaWRAP_v1.3_MAG
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 3000
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__;g__;s__
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach