organism: uncultured Rothia sp.
description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10228886 of study ERP139829.
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: Submitter Id
attributes.value: ERR10228886_bin.38_MetaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaspades v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: MetaWRAP v1.3
attributes.tag: broad-scale environmental context
attributes.value: human digestive system
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2016-11-24
attributes.tag: completeness score
attributes.value: 99.33
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 2.0
attributes.tag: environmental medium
attributes.value: saliva
attributes.tag: geographic location (country and/or sea)
attributes.value: Papua New Guinea
attributes.tag: geographic location (latitude)
attributes.value: -9.44314
attributes.tag: geographic location (longitude)
attributes.value: 147.17976
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: oral metagenome
attributes.tag: local environmental context
attributes.value: oral cavity
attributes.tag: metagenomic source
attributes.value: oral metagenome
attributes.tag: project name
attributes.value: Metagenomic sequencing of saliva samples from 65 individuals living in different environments of Papua New Guinea (coastal, highlands, lowlands) for the first characterization of oral microbiome diversity in Papua New Guinea.
attributes.tag: sample derived from
attributes.value: SAMEA110418639
attributes.tag: sample name
attributes.value: ERR10228886_bin.38_MetaWRAP_v1.3_MAG
attributes.tag: scientific_name
attributes.value: uncultured Rothia sp.
attributes.tag: sequencing method
attributes.value: HiSeq X Five
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Micrococcaceae;g__Rothia;s__
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach