organism: uncultured Candidatus Saccharibacteria bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17254985 of study SRP351203.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2022-09-09
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2022-09-09
attributes.tag: External Id
attributes.value: SAMEA111342770
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-09-09T12:18:05Z
attributes.tag: INSDC last update
attributes.value: 2022-09-09T12:18:05Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR17254985_bin.18_metawrap_v1.3.0_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metawrap v1.3.0
attributes.tag: broad-scale environmental context
attributes.value: plant
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: 2019-04-18
attributes.tag: completeness score
attributes.value: 52.39
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.0
attributes.tag: environmental medium
attributes.value: rhizosphere
attributes.tag: geographic location (country and/or sea)
attributes.value: Netherlands
attributes.tag: geographic location (latitude)
attributes.value: 51.98
attributes.tag: geographic location (longitude)
attributes.value: 5.67
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: rhizosphere metagenome
attributes.tag: local environmental context
attributes.value: tomato
attributes.tag: metagenomic source
attributes.value: rhizosphere metagenome
attributes.tag: project name
attributes.value: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).
attributes.tag: sample derived from
attributes.value: SAMN24114788
attributes.tag: sample name
attributes.value: SRR17254985_bin.18_metawrap_v1.3.0_MAG
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 4000
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach