organism: Spirochaetia bacterium
attributes.tag: 16S recovered
attributes.value: Yes
attributes.tag: 16S recovery software
attributes.value: PROKKA (version 1.14.5)
attributes.tag: ENA first public
attributes.value: 2024-01-18
attributes.tag: GAL
attributes.value: Queen Mary University of London
attributes.tag: GAL_sample_id
attributes.value: NOT PROVIDED
attributes.tag: INSDC center name
attributes.value: Tree of Life Programme
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: Minimap2 (version 2.24-r1122)
attributes.tag: Submitter Id
attributes.value: bc5d7161-f0e0-4005-9054-6f16412713ce
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaMDBG
attributes.tag: barcoding center
attributes.value: NOT PROVIDED
attributes.tag: binning parameters
attributes.value: coverage; graph; hic-mapping
attributes.tag: binning software
attributes.value: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
attributes.tag: broad-scale environmental context
attributes.value: aquatic biome
attributes.tag: collected_by
attributes.value: PHIL ZEROFSKI
attributes.tag: collecting institution
attributes.value: SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 96
attributes.tag: completeness software
attributes.value: checkM (version 1.2.1); checkM_DB (release 2015-01-16)
attributes.tag: contamination score
attributes.value: 0
attributes.tag: environmental medium
attributes.value: adult annelid tissue
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 32.89
attributes.tag: geographic location (longitude)
attributes.value: -117.26
attributes.tag: geographic location (region and locality)
attributes.value: California | offshore San Diego | Torrey Pines artificial reef
attributes.tag: habitat
attributes.value: Seafloor. Associated with mussels Mytilus californianus.
attributes.tag: host life stage
attributes.value: adult
attributes.tag: host scientific name
attributes.value: Phyllodoce medipapillata
attributes.tag: host sex
attributes.value: not collected
attributes.tag: host taxid
attributes.value: 868040
attributes.tag: identified_by
attributes.value: GREG ROUSE
attributes.tag: identifier_affiliation
attributes.value: SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: Annelid: Phyllodoce medipapillata
attributes.tag: local environmental context
attributes.value: marine benthic biome
attributes.tag: metagenomic source
attributes.value: annelid metagenome
attributes.tag: number of standard tRNAs extracted
attributes.value: 45
attributes.tag: organism part
attributes.value: WHOLE ORGANISM
attributes.tag: project name
attributes.value: ASG
attributes.tag: proxy voucher
attributes.value: SIO:BIC:A5913
attributes.tag: proxy voucher url
attributes.value: https://sioapps.ucsd.edu/collections/bi/catalog/A5913/
attributes.tag: sample collection device or method
attributes.value: hand-collected via SCUBA diving
attributes.tag: sample derived from
attributes.value: SAMEA115116693
attributes.tag: sample name
attributes.value: bc5d7161-f0e0-4005-9054-6f16412713ce
attributes.tag: scientific_name
attributes.value: Spirochaetia bacterium
attributes.tag: sequencing method
attributes.value: Pacbio Sequel II
attributes.tag: specimen_id
attributes.value: QMOUL0000165
attributes.tag: tRNA extraction software
attributes.value: PROKKA (version 1.14.5)
attributes.tag: taxonomic classification
attributes.value: GTDB-TK (version 2.3.2); GTDB (release 214)
attributes.tag: taxonomic identity marker
attributes.value: taxonomic classification defined by topology and ANI
attributes.tag: tolid
attributes.value: wpPhyMedi1.Spirochaetia_1
attributes.tag: voucher institution url
attributes.value: https://ror.org/04v7hvq31