organism: uncultured Peptococcaceae bacterium
description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run DRR247342 of study DRP006591.
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: Submitter Id
attributes.value: DRR247342_bin.28_MetaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: MetaWRAP v1.3
attributes.tag: broad-scale environmental context
attributes.value: human digestive system
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: not provided
attributes.tag: completeness score
attributes.value: 53.51
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.0
attributes.tag: environmental medium
attributes.value: saliva
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: oral metagenome
attributes.tag: local environmental context
attributes.value: oral cavity
attributes.tag: metagenomic source
attributes.value: oral metagenome
attributes.tag: project name
attributes.value: Deep shotgun metagenome sequencing (>10 Gb per sample) of bulk DNA extracted from saliva of MRONJ patients and healthy controls (initially 5 vs 5 individuals) was performed to overcome limitations of prior studies explored the association between MRONJ and microbial or viral infection. The sequence data after the preprocessing and removal of human reads are registered, including those of additional 5 patients.
attributes.tag: sample derived from
attributes.value: SAMD00248605
attributes.tag: sample name
attributes.value: DRR247342_bin.28_MetaWRAP_v1.3_MAG
attributes.tag: scientific_name
attributes.value: uncultured Peptococcaceae bacterium
attributes.tag: sequencing method
attributes.value: HiSeq X Ten
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptococcaceae;g__;s__
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach