organism: marine plankton metagenome
description: marine/brackish water plankton sample, sequenced with 16S and 18S rRNA metabarcoding
identifiers.namespace: BioSample
identifiers.id: SAMEA110699419
attributes.tag: ENA first public
attributes.value: 2024-08-24
attributes.tag: External Id
attributes.value: SAMEA110699419
attributes.tag: INSDC center name
attributes.value: SCIENCE FOR LIFE LABORATORY, KTH ROYAL INSTITUTE OF TECHNOLOGY
attributes.tag: INSDC last update
attributes.value: 2022-08-24T11:35:55Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Secchi_depth
attributes.value: NA
attributes.tag: Submitter Id
attributes.value: P20XXX_132
attributes.tag: air_pressure
attributes.value: 1023
attributes.tag: air_temperature
attributes.value: 7.5
attributes.tag: alkalinity_0-1m
attributes.value: 2.252
attributes.tag: alkalinity_10m
attributes.value: 2.247
attributes.tag: alkalinity_5m
attributes.value: 2.257
attributes.tag: ammonium_NH4_0-1m
attributes.value: 0.2
attributes.tag: ammonium_NH4_10m
attributes.value: 0.2
attributes.tag: ammonium_NH4_5m
attributes.value: 0.2
attributes.tag: broad-scale environmental context
attributes.value: marine pelagic biome (ENVO:01000023)
attributes.tag: chlorophyll_a_0-1m
attributes.value: 0.8
attributes.tag: chlorophyll_a_10m
attributes.value: 0.8
attributes.tag: chlorophyll_a_5m
attributes.value: 0.7
attributes.tag: cloud_observation
attributes.value: 9
attributes.tag: collection date
attributes.value: 2020-02-06
attributes.tag: conductivity_CTD_0-1m
attributes.value: NA
attributes.tag: conductivity_CTD_10m
attributes.value: NA
attributes.tag: conductivity_CTD_5m
attributes.value: NA
attributes.tag: data_access
attributes.value: http://sharkweb.smhi.se. http://sharkdata.se
attributes.tag: depth
attributes.value: 0-10
attributes.tag: dissolved_oxygen_O2_CTD_0-1m
attributes.value: NA
attributes.tag: dissolved_oxygen_O2_CTD_10m
attributes.value: NA
attributes.tag: dissolved_oxygen_O2_CTD_5m
attributes.value: NA
attributes.tag: environmental medium
attributes.value: saline water (ENVO:00002010)
attributes.tag: geographic location (country and/or sea)
attributes.value: North Sea
attributes.tag: geographic location (latitude)
attributes.value: 58.28523
attributes.tag: geographic location (longitude)
attributes.value: 10.50647
attributes.tag: humic_substance_0-1m
attributes.value: NA
attributes.tag: humic_substance_10m
attributes.value: NA
attributes.tag: humic_substance_5m
attributes.value: NA
attributes.tag: ice_observation
attributes.value: 0
attributes.tag: library_name_16S
attributes.value: P20310_132
attributes.tag: library_name_18S
attributes.value: P20107_132
attributes.tag: local environmental context
attributes.value: neritic epipelagic zome biome (ENVO:01000042)
attributes.tag: location_basin
attributes.value: Kattegatt
attributes.tag: nitrate_NO3_0-1m
attributes.value: 5.57
attributes.tag: nitrate_NO3_10m
attributes.value: 5.66
attributes.tag: nitrate_NO3_5m
attributes.value: 5.46
attributes.tag: nitrite+nitrate_NO2+NO3_0-1m
attributes.value: 5.64
attributes.tag: nitrite+nitrate_NO2+NO3_10m
attributes.value: 5.73
attributes.tag: nitrite+nitrate_NO2+NO3_5m
attributes.value: 5.53
attributes.tag: nitrite_NO2_0-1m
attributes.value: 0.07
attributes.tag: nitrite_NO2_10m
attributes.value: 0.07
attributes.tag: nitrite_NO2_5m
attributes.value: 0.07
attributes.tag: origin
attributes.value: SMHI
attributes.tag: pH_0-1m
attributes.value: 8.08
attributes.tag: pH_10m
attributes.value: 8.08
attributes.tag: pH_5m
attributes.value: 8.08
attributes.tag: pcr primers
attributes.value: 16S (341F (CCTACGGGNGGCWGCAG)-805R(GACTACHVGGGTATCTAATCC)), 18S (V4F(CCAGCASCYGCGGTAATTCC)-V4RB(ACTTTCGTTCTTGATYRR))
attributes.tag: phosphate_PO4_0-1m
attributes.value: 0.49
attributes.tag: phosphate_PO4_10m
attributes.value: 0.49
attributes.tag: phosphate_PO4_5m
attributes.value: 0.49
attributes.tag: project name
attributes.value: PRJEB55296
attributes.tag: replicate
attributes.value: 1
attributes.tag: salinity_CTD_0-1m
attributes.value: 32.4
attributes.tag: salinity_CTD_10m
attributes.value: 32.41
attributes.tag: salinity_CTD_5m
attributes.value: 32.41
attributes.tag: salinity_average
attributes.value: 32.41
attributes.tag: sample name
attributes.value: P20XXX_132
attributes.tag: sample_DNA_concentration
attributes.value: 3.42
attributes.tag: sampled_depth
attributes.value: 0-10
attributes.tag: sampled_volume
attributes.value: 500
attributes.tag: scientific_name
attributes.value: marine plankton metagenome
attributes.tag: sequencing method
attributes.value: Sequencing by synthesis (Illumina)
attributes.tag: silicate_SiO3_0-1m
attributes.value: 4.3
attributes.tag: silicate_SiO3_10m
attributes.value: 4.2
attributes.tag: silicate_SiO3_5m
attributes.value: 4.3
attributes.tag: station_ID
attributes.value: 264194
attributes.tag: station_name
attributes.value: A17
attributes.tag: target gene
attributes.value: 16S,18S rRNA
attributes.tag: target subfragment
attributes.value: 16S-V3/4, 18S-V4
attributes.tag: temperature_water_CTD_0-1m
attributes.value: 6.17
attributes.tag: temperature_water_CTD_10m
attributes.value: 6.18
attributes.tag: temperature_water_CTD_5m
attributes.value: 6.18
attributes.tag: total_nitrogen_0-1m
attributes.value: 13.5
attributes.tag: total_nitrogen_10m
attributes.value: 13.1
attributes.tag: total_nitrogen_5m
attributes.value: 12.9
attributes.tag: total_phosphorus_0-1m
attributes.value: 0.76
attributes.tag: total_phosphorus_10m
attributes.value: 0.73
attributes.tag: total_phosphorus_5m
attributes.value: 0.71
attributes.tag: water_depth
attributes.value: 345
attributes.tag: wave_observation
attributes.value: 9
attributes.tag: weather_observation
attributes.value: 9
attributes.tag: wind_direction
attributes.value: 32
attributes.tag: wind_speed
attributes.value: 3