organism: rhizosphere metagenome
description: This study was initiated to find out the absolute abundance of different bacterial communities present in an experimental plot of cultivated rice rhizosphere habitat soil at Indian Sundarbans. It was done through isolation of soil DNA from the respective site and amplicon database generation through 16S rRNA Sequencing using Illumina MiSeq platform of next generation sequencing. Comparison of this rhizosphere microbiome information of control plots with that of experimental addition of PGP root endophytic bacteria isolated from mangrove species of Indian Sundarbans might result into identification of some particular bacterial community abundances which get enriched in the experimental cultivated rice rhizosphere after its experimental addition to the soil and cause plant growth promotion subsequently.
identifiers.namespace: BioSample
identifiers.id: SAMN30789042
identifiers.namespace: pda|krishnaray
identifiers.id: Experimental plot cultivated rice rhizosphere root endophyte BC3 added soil microbiome from Sundarbans
attributes.tag: collection_date
attributes.value: 2021-09-12
attributes.tag: depth
attributes.value: 0 to 30 cm
attributes.tag: elev
attributes.value: 1 m
attributes.tag: env_broad_scale
attributes.value: cultivated rice rhizosphere microbiome
attributes.tag: env_local_scale
attributes.value: lowland
attributes.tag: env_medium
attributes.value: cultivated field soil
attributes.tag: geo_loc_name
attributes.value: India: Sundarbans
attributes.tag: lat_lon
attributes.value: 21.47 N 88.22 E
attributes.tag: isolation_source
attributes.value: Experimental plot cultivated rice rhizosphere root endophyte BC3 added soil microbiome from Sundarbans
attributes.tag: BioSampleModel
attributes.value: MIMS.me
attributes.tag: BioSampleModel
attributes.value: MIGS/MIMS/MIMARKS.soil