organism: Devosia sp.
attributes.tag: 16S recovered
attributes.value: Yes
attributes.tag: 16S recovery software
attributes.value: PROKKA (version 1.14.5)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2023-11-27T09:43:17Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2023-11-27T09:43:17Z
attributes.tag: External Id
attributes.value: SAMEA114745601
attributes.tag: GAL
attributes.value: Dalhousie University
attributes.tag: GAL_sample_id
attributes.value: NOT PROVIDED
attributes.tag: INSDC center name
attributes.value: Tree of Life Programme
attributes.tag: INSDC first public
attributes.value: 2023-11-27T09:43:17Z
attributes.tag: INSDC last update
attributes.value: 2023-11-27T09:43:17Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: Minimap2 (version 2.24-r1122)
attributes.tag: Submitter Id
attributes.value: 018319a4-ce29-4a59-b7db-12d73b409573
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaMDBG
attributes.tag: binning parameters
attributes.value: coverage; graph; hic-mapping
attributes.tag: binning software
attributes.value: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
attributes.tag: broad-scale environmental context
attributes.value: aquatic biome
attributes.tag: collected by
attributes.value: LUCIE GALLOT-LAVALLEE
attributes.tag: collecting institution
attributes.value: DALHOUSIE UNIVERSITY
attributes.tag: collection date
attributes.value: 2021-05-04
attributes.tag: completeness score
attributes.value: 98.5
attributes.tag: completeness software
attributes.value: checkM (version 1.2.1); checkM_DB (release 2015-01-16)
attributes.tag: contamination score
attributes.value: 0.2
attributes.tag: culture_or_strain_id
attributes.value: CCAP 1560/4
attributes.tag: environmental medium
attributes.value: amoeba culture
attributes.tag: geographic location (country and/or sea)
attributes.value: Canada
attributes.tag: geographic location (latitude)
attributes.value: 44.64
attributes.tag: geographic location (longitude)
attributes.value: -63.58
attributes.tag: geographic location (region and locality)
attributes.value: HALIFAX | DALHOUSIE UNIVERSITY
attributes.tag: habitat
attributes.value: Dalhousie University laboratory
attributes.tag: host scientific name
attributes.value: Paramoeba pemaquidensis
attributes.tag: host taxid
attributes.value: 180228
attributes.tag: identified by
attributes.value: Culture Collection of Algae and Protozoa
attributes.tag: identifier_affiliation
attributes.value: Culture Collection of Algae and Protozoa
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: Amoeba: Paramoeba pemaquidensis
attributes.tag: local environmental context
attributes.value: marine biome
attributes.tag: metagenomic source
attributes.value: protist metagenome
attributes.tag: number of standard tRNAs extracted
attributes.value: 49
attributes.tag: organism part
attributes.value: WHOLE ORGANISM
attributes.tag: project name
attributes.value: ToL
attributes.tag: sample derived from
attributes.value: SAMEA114745600
attributes.tag: sample name
attributes.value: 018319a4-ce29-4a59-b7db-12d73b409573
attributes.tag: scientific_name
attributes.value: Devosia sp.
attributes.tag: sequencing method
attributes.value: Pacbio Sequel II
attributes.tag: specimen id
attributes.value: DU0000003
attributes.tag: specimen voucher
attributes.value: DU0000003-1.png
attributes.tag: symbiont
attributes.value: N
attributes.tag: tRNA extraction software
attributes.value: PROKKA (version 1.14.5)
attributes.tag: taxonomic classification
attributes.value: GTDB-TK (version 2.3.2); GTDB (release 214)
attributes.tag: taxonomic identity marker
attributes.value: taxonomic classification defined by topology and ANI
attributes.tag: tolid
attributes.value: paParPema1.Devosia_sp_1