organism: Schaalia odontolytica
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: Submitter Id
attributes.value: SRR11085294_bin.2_MetaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: MetaWRAP v1.3
attributes.tag: broad-scale environmental context
attributes.value: human digestive system
attributes.tag: broker name
attributes.value: EBI-EMG
attributes.tag: collection date
attributes.value: 2012
attributes.tag: completeness score
attributes.value: 85.71
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 1.07
attributes.tag: environmental medium
attributes.value: subgingival plaque
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: oral metagenome
attributes.tag: local environmental context
attributes.value: oral cavity
attributes.tag: metagenomic source
attributes.value: oral metagenome
attributes.tag: project name
attributes.value: The samples within this Bioproject represents the oral metagenome (whole genome shotgun (WGS) sequencing) collected from the Native American Indian tribes of South Dakota. The samples were collected from the dental plaque of children aged 5-18 years old. The samples are collected from 5 different conditions: healthy, light caries, moderate caries, severe caries, and periodontal caries. The project goal is to identify the species level characterization of the bacterial community present in the oral metagenome.
attributes.tag: sample derived from
attributes.value: SAMN13714814
attributes.tag: sample name
attributes.value: SRR11085294_bin.2_MetaWRAP_v1.3_MAG
attributes.tag: scientific_name
attributes.value: Schaalia odontolytica
attributes.tag: sequencing method
attributes.value: Illumina MiSeq
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Schaalia;s__Schaalia odontolytica
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach