title: c4237395-2727-4e7e-8078-0816f8c4fa21-asg-bin.149
organism: uncultured Rhizobiaceae bacterium
attributes.tag: 16S recovered
attributes.value: Yes
attributes.tag: 16S recovery software
attributes.value: PROKKA (version 1.14.5)
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2023-04-11T15:19:57Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2023-11-20T15:49:20Z
attributes.tag: External Id
attributes.value: SAMEA112889368
attributes.tag: GAL
attributes.value: Queen Mary University of London
attributes.tag: GAL_sample_id
attributes.value: QMUOL0000035
attributes.tag: INSDC center name
attributes.value: Tree of Life Programme
attributes.tag: INSDC first public
attributes.value: 2023-04-11T15:19:57Z
attributes.tag: INSDC last update
attributes.value: 2023-11-20T15:49:20Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: Minimap2 (version 2.24-r1122)
attributes.tag: Submitter Id
attributes.value: c4237395-2727-4e7e-8078-0816f8c4fa21
attributes.tag: assembly quality
attributes.value: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
attributes.tag: assembly software
attributes.value: Hifiasm (version 0.16.1-r375)
attributes.tag: barcoding center
attributes.value: NOT PROVIDED
attributes.tag: binning parameters
attributes.value: coverage; graph; hic-mapping
attributes.tag: binning software
attributes.value: DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
attributes.tag: broad-scale environmental context
attributes.value: aquatic biome
attributes.tag: collected by
attributes.value: RALPH APPY
attributes.tag: collecting institution
attributes.value: PORT OF LOS ANGELES
attributes.tag: collection date
attributes.value: 2021-09-23
attributes.tag: completeness score
attributes.value: 91.08
attributes.tag: completeness software
attributes.value: checkM (version 1.2.1); checkM_DB (release 2015-01-16)
attributes.tag: contamination score
attributes.value: 4.32
attributes.tag: depth
attributes.value: 0-2
attributes.tag: environmental medium
attributes.value: adult annelid tissue
attributes.tag: geographic location (country and/or sea)
attributes.value: USA
attributes.tag: geographic location (latitude)
attributes.value: 34.10542
attributes.tag: geographic location (longitude)
attributes.value: -119.12589
attributes.tag: geographic location (region and locality)
attributes.value: California | Ventura County | Mugu Lagoon
attributes.tag: habitat
attributes.value: salt marsh
attributes.tag: host scientific name
attributes.value: Branchellion lobata
attributes.tag: host taxid
attributes.value: 375517
attributes.tag: identified by
attributes.value: SHANA GOFFREDI
attributes.tag: identifier_affiliation
attributes.value: OCCIDENTAL COLLEGE
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: Annelid: Branchellion lobata
attributes.tag: lifestage
attributes.value: adult
attributes.tag: local environmental context
attributes.value: marine salt marsh biome
attributes.tag: metagenomic source
attributes.value: annelid metagenome
attributes.tag: number of standard tRNAs extracted
attributes.value: 34
attributes.tag: organism part
attributes.value: WHOLE ORGANISM
attributes.tag: project name
attributes.value: ASG
attributes.tag: sample derived from
attributes.value: SAMEA112889360
attributes.tag: sample name
attributes.value: c4237395-2727-4e7e-8078-0816f8c4fa21
attributes.tag: sample same as
attributes.value: SAMEA11604894
attributes.tag: scientific_name
attributes.value: uncultured Rhizobiaceae bacterium
attributes.tag: sequencing method
attributes.value: Pacbio Sequel II
attributes.tag: sex
attributes.value: NOT COLLECTED
attributes.tag: specimen id
attributes.value: QMOUL0000035
attributes.tag: specimen voucher
attributes.value: SIO:BIC:A13684
attributes.tag: symbiont
attributes.value: N
attributes.tag: tRNA extraction software
attributes.value: PROKKA (version 1.14.5)
attributes.tag: taxonomic classification
attributes.value: GTDB-TK (version 2.1.1); GTDB (release 207_v2)
attributes.tag: taxonomic identity marker
attributes.value: taxonomic classification defined by topology and ANI
attributes.tag: tolid
attributes.value: wcBraLoba9.Rhizobiaceae_1