title: Metagenome-assembled genome: SRR8387718_bin.19_metaWRAP_v1.3_MAG
organism: uncultured Clostridia bacterium
description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR8387718 of study SRP175061.
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2022-10-21
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2022-10-21
attributes.tag: External Id
attributes.value: SAMEA111499019
attributes.tag: INSDC center alias
attributes.value: EMG
attributes.tag: INSDC center name
attributes.value: EMG
attributes.tag: INSDC first public
attributes.value: 2022-10-21T20:21:55Z
attributes.tag: INSDC last update
attributes.value: 2022-10-21T20:21:55Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: SRR8387718_bin.19_metaWRAP_v1.3_MAG
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: assembly software
attributes.value: metaSPAdes v3.15.3
attributes.tag: binning parameters
attributes.value: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
attributes.tag: binning software
attributes.value: metaWRAP v1.3
attributes.tag: broad-scale environmental context
attributes.value: Sheep digestive system
attributes.tag: broker name
attributes.value: EMG broker account, EMBL-EBI
attributes.tag: collection date
attributes.value: 2016-02-18
attributes.tag: completeness score
attributes.value: 96.61
attributes.tag: completeness software
attributes.value: CheckM
attributes.tag: contamination score
attributes.value: 0.81
attributes.tag: environmental medium
attributes.value: Rumen content
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: geographic location (latitude)
attributes.value: not provided
attributes.tag: geographic location (longitude)
attributes.value: not provided
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: sheep gut metagenome
attributes.tag: local environmental context
attributes.value: Rumen
attributes.tag: metagenomic source
attributes.value: sheep gut metagenome
attributes.tag: project name
attributes.value: Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model.
attributes.tag: sample derived from
attributes.value: SAMN10688361
attributes.tag: sample name
attributes.value: SRR8387718_bin.19_metaWRAP_v1.3_MAG
attributes.tag: sequencing method
attributes.value: HiSeq X Ten
attributes.tag: taxonomic classification
attributes.value: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Catabacteriaceae;g__Catabacter;s__
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach