title: ERS11712891
organism: Akkermansia muciniphila
description: Bacteria; Verrucomicrobia
attributes.tag: ENA-FIRST-PUBLIC
attributes.value: 2024-05-23T00:29:09Z
attributes.tag: ENA-LAST-UPDATE
attributes.value: 2024-05-23T00:29:09Z
attributes.tag: External Id
attributes.value: SAMEA110046795
attributes.tag: INSDC center name
attributes.value: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
attributes.tag: INSDC first public
attributes.value: 2024-05-23T00:29:09Z
attributes.tag: INSDC last update
attributes.value: 2024-05-23T00:29:09Z
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: HRSG-E13-bin-67
attributes.tag: assembly quality
attributes.value: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
attributes.tag: assembly software
attributes.value: MEGAHIT; kmer set 49,69,89,109,129,149
attributes.tag: binning parameters
attributes.value: coverage and kmer
attributes.tag: binning software
attributes.value: MetaBAT2
attributes.tag: collection date
attributes.value: 2018-05-09
attributes.tag: completeness score
attributes.value: 90.54
attributes.tag: completeness software
attributes.value: checkm
attributes.tag: contamination score
attributes.value: 1.08
attributes.tag: environment (biome)
attributes.value: freshwater lake
attributes.tag: environment (feature)
attributes.value: lake
attributes.tag: environment (material)
attributes.value: fresh water
attributes.tag: geographic location (country and/or sea)
attributes.value: Czech Republic
attributes.tag: geographic location (latitude)
attributes.value: 48.846361
attributes.tag: geographic location (longitude)
attributes.value: 14.487639
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: Freshwater lake
attributes.tag: metagenomic source
attributes.value: freshwater metagenome
attributes.tag: project name
attributes.value: PRJEB52406
attributes.tag: sample derived from
attributes.value: ERS11712891
attributes.tag: sample name
attributes.value: HRSG-E13-bin-67
attributes.tag: scientific_name
attributes.value: Akkermansia muciniphila
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach