title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL223_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Negative
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 30
attributes.tag: site
attributes.value: Mulago
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 1/6/2022
attributes.tag: volume
attributes.value: 1000
attributes.tag: library_prep_date
attributes.value: 1/12/2021
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 26167321
attributes.tag: reads_trimmed_filtered
attributes.value: 26130448
attributes.tag: align_input
attributes.value: 26036043
attributes.tag: align_unique
attributes.value: 6176914
attributes.tag: align_multi
attributes.value: 7901579
attributes.tag: align_tooshort
attributes.value: 11672765
attributes.tag: duplication_rate
attributes.value: 0.664005802648461
attributes.tag: ftcount
attributes.value: 826930
attributes.tag: bias53
attributes.value: 1.2
attributes.tag: intron_exon_ratio
attributes.value: 0.428822614986435
attributes.tag: exon_ratio
attributes.value: 0.436039846253436
attributes.tag: exonic_reads
attributes.value: 1729791
attributes.tag: intronic_reads
attributes.value: 741773.5
attributes.tag: intergenic_reads
attributes.value: 1495483.5
attributes.tag: rrna_reads
attributes.value: 607569
attributes.tag: mtrna_reads
attributes.value: 3270
attributes.tag: nuclear_reads
attributes.value: 2510884
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.194626172789834
attributes.tag: tb
attributes.value: negative
attributes.tag: tb_binary
attributes.value: 0
attributes.tag: sample_group_granular
attributes.value: negative_GHL_HIVNegative
attributes.tag: semiquant
attributes.value: Negative
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing