title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_620_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 33
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 19.5400009155273
attributes.tag: qxr_score
attributes.value: 0.0610000006854534
attributes.tag: lunit_score
attributes.value: 2.26999998092651
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 7200555
attributes.tag: reads_trimmed_filtered
attributes.value: 7179858
attributes.tag: align_input
attributes.value: 7089660
attributes.tag: align_unique
attributes.value: 2515780
attributes.tag: align_multi
attributes.value: 615145
attributes.tag: align_tooshort
attributes.value: 3896451
attributes.tag: duplication_rate
attributes.value: 0.319443147555335
attributes.tag: ftcount
attributes.value: 376314
attributes.tag: bias53
attributes.value: 1.27
attributes.tag: intron_exon_ratio
attributes.value: 1.55294588941901
attributes.tag: exon_ratio
attributes.value: 0.254907392135366
attributes.tag: exonic_reads
attributes.value: 525461
attributes.tag: intronic_reads
attributes.value: 816012.5
attributes.tag: intergenic_reads
attributes.value: 719906.5
attributes.tag: rrna_reads
attributes.value: 103457
attributes.tag: mtrna_reads
attributes.value: 55783
attributes.tag: nuclear_reads
attributes.value: 1762111
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.053845965677276
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Low
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing