title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_583_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Negative
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 46
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 18.9599990844727
attributes.tag: qxr_score
attributes.value: 0.090999998152256
attributes.tag: lunit_score
attributes.value: 3.57999992370605
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 3/29/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 3/30/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 33548192
attributes.tag: reads_trimmed_filtered
attributes.value: 33490913
attributes.tag: align_input
attributes.value: 33230448
attributes.tag: align_unique
attributes.value: 4648262
attributes.tag: align_multi
attributes.value: 899786
attributes.tag: align_tooshort
attributes.value: 27577138
attributes.tag: duplication_rate
attributes.value: 0.696539770668136
attributes.tag: ftcount
attributes.value: 167672
attributes.tag: bias53
attributes.value: 1.26
attributes.tag: intron_exon_ratio
attributes.value: 2.19475350722819
attributes.tag: exon_ratio
attributes.value: 0.196968333795629
attributes.tag: exonic_reads
attributes.value: 290079.5
attributes.tag: intronic_reads
attributes.value: 636653
attributes.tag: intergenic_reads
attributes.value: 545989
attributes.tag: rrna_reads
attributes.value: 55906
attributes.tag: mtrna_reads
attributes.value: 23415
attributes.tag: nuclear_reads
attributes.value: 1287877
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.0408909316719305
attributes.tag: tb
attributes.value: negative
attributes.tag: tb_binary
attributes.value: 0
attributes.tag: sample_group_granular
attributes.value: negative_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Negative
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing