title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_630_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 35
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 68.1100006103516
attributes.tag: qxr_score
attributes.value: 0.791000008583069
attributes.tag: lunit_score
attributes.value: 20.1700000762939
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 9762604
attributes.tag: reads_trimmed_filtered
attributes.value: 9731908
attributes.tag: align_input
attributes.value: 9592824
attributes.tag: align_unique
attributes.value: 2065207
attributes.tag: align_multi
attributes.value: 937250
attributes.tag: align_tooshort
attributes.value: 6521203
attributes.tag: duplication_rate
attributes.value: 0.6100247381691
attributes.tag: ftcount
attributes.value: 299453
attributes.tag: bias53
attributes.value: 1.31
attributes.tag: intron_exon_ratio
attributes.value: 0.577004556579276
attributes.tag: exon_ratio
attributes.value: 0.43891766460014
attributes.tag: exonic_reads
attributes.value: 428611
attributes.tag: intronic_reads
attributes.value: 247310.5
attributes.tag: intergenic_reads
attributes.value: 300596.5
attributes.tag: rrna_reads
attributes.value: 98104
attributes.tag: mtrna_reads
attributes.value: 38908
attributes.tag: nuclear_reads
attributes.value: 736793
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.112272188875092
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Low
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing