title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL274_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 59
attributes.tag: site
attributes.value: Mulago
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 1/11/2022
attributes.tag: volume
attributes.value: 1000
attributes.tag: library_prep_date
attributes.value: 1/12/2022
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 26300753
attributes.tag: reads_trimmed_filtered
attributes.value: 26262508
attributes.tag: align_input
attributes.value: 26176075
attributes.tag: align_unique
attributes.value: 7214216
attributes.tag: align_multi
attributes.value: 5187927
attributes.tag: align_tooshort
attributes.value: 13465254
attributes.tag: duplication_rate
attributes.value: 0.657198613496364
attributes.tag: ftcount
attributes.value: 476173
attributes.tag: bias53
attributes.value: 1.32
attributes.tag: intron_exon_ratio
attributes.value: 1.09446945892681
attributes.tag: exon_ratio
attributes.value: 0.280377461226101
attributes.tag: exonic_reads
attributes.value: 973214
attributes.tag: intronic_reads
attributes.value: 1065153
attributes.tag: intergenic_reads
attributes.value: 1432718
attributes.tag: rrna_reads
attributes.value: 448239
attributes.tag: mtrna_reads
attributes.value: 9239
attributes.tag: nuclear_reads
attributes.value: 2395140
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.157132500741424
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_GHL_HIVPositive
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing