title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL16_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 27
attributes.tag: site
attributes.value: Kisenyi
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 11/3/2021
attributes.tag: volume
attributes.value: 1000
attributes.tag: library_prep_date
attributes.value: 11/4/2021
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 38403303
attributes.tag: reads_trimmed_filtered
attributes.value: 38394571
attributes.tag: align_input
attributes.value: 38384050
attributes.tag: align_unique
attributes.value: 6687906
attributes.tag: align_multi
attributes.value: 4672265
attributes.tag: align_tooshort
attributes.value: 26845346
attributes.tag: duplication_rate
attributes.value: 0.803645508146371
attributes.tag: ftcount
attributes.value: 539650
attributes.tag: bias53
attributes.value: 1.32
attributes.tag: intron_exon_ratio
attributes.value: 0.365897156445061
attributes.tag: exon_ratio
attributes.value: 0.52359590443686
attributes.tag: exonic_reads
attributes.value: 862951.5
attributes.tag: intronic_reads
attributes.value: 315751.5
attributes.tag: intergenic_reads
attributes.value: 469422
attributes.tag: rrna_reads
attributes.value: 254709
attributes.tag: mtrna_reads
attributes.value: 16254
attributes.tag: nuclear_reads
attributes.value: 1196903
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.173523332511278
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_GHL_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing