title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_614_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 65
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 61.6199989318848
attributes.tag: qxr_score
attributes.value: 0.490000009536743
attributes.tag: lunit_score
attributes.value: 20.8600006103516
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 17484157
attributes.tag: reads_trimmed_filtered
attributes.value: 17460668
attributes.tag: align_input
attributes.value: 17369702
attributes.tag: align_unique
attributes.value: 2893040
attributes.tag: align_multi
attributes.value: 1617071
attributes.tag: align_tooshort
attributes.value: 12787287
attributes.tag: duplication_rate
attributes.value: 0.571660663084948
attributes.tag: ftcount
attributes.value: 622634
attributes.tag: bias53
attributes.value: 1.26
attributes.tag: intron_exon_ratio
attributes.value: 0.378576912456983
attributes.tag: exon_ratio
attributes.value: 0.524883945422608
attributes.tag: exonic_reads
attributes.value: 890922
attributes.tag: intronic_reads
attributes.value: 337282.5
attributes.tag: intergenic_reads
attributes.value: 469165
attributes.tag: rrna_reads
attributes.value: 253251
attributes.tag: mtrna_reads
attributes.value: 306216
attributes.tag: nuclear_reads
attributes.value: 1010668
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.161292500326405
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing