title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_649_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 41
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 57.189998626709
attributes.tag: qxr_score
attributes.value: 0.0689999982714653
attributes.tag: lunit_score
attributes.value: 7.92999982833862
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/7/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 60377169
attributes.tag: reads_trimmed_filtered
attributes.value: 60294762
attributes.tag: align_input
attributes.value: 60013913
attributes.tag: align_unique
attributes.value: 29983905
attributes.tag: align_multi
attributes.value: 6466518
attributes.tag: align_tooshort
attributes.value: 23060643
attributes.tag: duplication_rate
attributes.value: 0.672758745243924
attributes.tag: ftcount
attributes.value: 2948986
attributes.tag: bias53
attributes.value: 1.21
attributes.tag: intron_exon_ratio
attributes.value: 0.801308874539323
attributes.tag: exon_ratio
attributes.value: 0.397466273689256
attributes.tag: exonic_reads
attributes.value: 4060053
attributes.tag: intronic_reads
attributes.value: 3253356.5
attributes.tag: intergenic_reads
attributes.value: 2901427
attributes.tag: rrna_reads
attributes.value: 593366
attributes.tag: mtrna_reads
attributes.value: 1052327
attributes.tag: nuclear_reads
attributes.value: 8015485
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.0614175621233767
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing