title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_555_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 22
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 95.0800018310547
attributes.tag: qxr_score
attributes.value: 0.930999994277954
attributes.tag: lunit_score
attributes.value: 31.8299999237061
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 3/27/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 3/28/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 20893519
attributes.tag: reads_trimmed_filtered
attributes.value: 20883034
attributes.tag: align_input
attributes.value: 20849728
attributes.tag: align_unique
attributes.value: 1550036
attributes.tag: align_multi
attributes.value: 1503661
attributes.tag: align_tooshort
attributes.value: 17728191
attributes.tag: duplication_rate
attributes.value: 0.434207506501897
attributes.tag: ftcount
attributes.value: 383343
attributes.tag: bias53
attributes.value: 1.2
attributes.tag: intron_exon_ratio
attributes.value: 0.62703275399929
attributes.tag: exon_ratio
attributes.value: 0.379280102433094
attributes.tag: exonic_reads
attributes.value: 615390.5
attributes.tag: intronic_reads
attributes.value: 385870
attributes.tag: intergenic_reads
attributes.value: 621262
attributes.tag: rrna_reads
attributes.value: 254790
attributes.tag: mtrna_reads
attributes.value: 47048
attributes.tag: nuclear_reads
attributes.value: 1075502
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.184987003935121
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing