title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_553_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 40
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 52.1800003051758
attributes.tag: qxr_score
attributes.value: 0.75
attributes.tag: lunit_score
attributes.value: 10.4499998092651
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 3/27/2023
attributes.tag: volume
attributes.value: 250
attributes.tag: library_prep_date
attributes.value: 3/28/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 10364283
attributes.tag: reads_trimmed_filtered
attributes.value: 10362376
attributes.tag: align_input
attributes.value: 10357945
attributes.tag: align_unique
attributes.value: 516978
attributes.tag: align_multi
attributes.value: 463063
attributes.tag: align_tooshort
attributes.value: 9367570
attributes.tag: duplication_rate
attributes.value: 0.601792855222237
attributes.tag: ftcount
attributes.value: 126101
attributes.tag: bias53
attributes.value: 1.14
attributes.tag: intron_exon_ratio
attributes.value: 0.284239803681753
attributes.tag: exon_ratio
attributes.value: 0.536239781251009
attributes.tag: exonic_reads
attributes.value: 190914.5
attributes.tag: intronic_reads
attributes.value: 54265.5
attributes.tag: intergenic_reads
attributes.value: 110844.5
attributes.tag: rrna_reads
attributes.value: 49715
attributes.tag: mtrna_reads
attributes.value: 27582
attributes.tag: nuclear_reads
attributes.value: 222117
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.166041000086836
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing