title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_631_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Negative
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 35
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 82.1100006103516
attributes.tag: qxr_score
attributes.value: 0.674000024795532
attributes.tag: lunit_score
attributes.value: 52.0699996948242
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 12965138
attributes.tag: reads_trimmed_filtered
attributes.value: 12944474
attributes.tag: align_input
attributes.value: 12860702
attributes.tag: align_unique
attributes.value: 4584283
attributes.tag: align_multi
attributes.value: 3051722
attributes.tag: align_tooshort
attributes.value: 5113957
attributes.tag: duplication_rate
attributes.value: 0.548784288562235
attributes.tag: ftcount
attributes.value: 1177875
attributes.tag: bias53
attributes.value: 1.2
attributes.tag: intron_exon_ratio
attributes.value: 0.24832309083348
attributes.tag: exon_ratio
attributes.value: 0.60143539804382
attributes.tag: exonic_reads
attributes.value: 1828736.5
attributes.tag: intronic_reads
attributes.value: 454117.5
attributes.tag: intergenic_reads
attributes.value: 757766
attributes.tag: rrna_reads
attributes.value: 365431
attributes.tag: mtrna_reads
attributes.value: 414587
attributes.tag: nuclear_reads
attributes.value: 1950925
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.133811287895793
attributes.tag: tb
attributes.value: negative
attributes.tag: tb_binary
attributes.value: 0
attributes.tag: sample_group_granular
attributes.value: negative_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Negative
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing