title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_612_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 42
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 70.3399963378906
attributes.tag: qxr_score
attributes.value: 0.200000002980232
attributes.tag: lunit_score
attributes.value: 8.75
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 23634060
attributes.tag: reads_trimmed_filtered
attributes.value: 23626512
attributes.tag: align_input
attributes.value: 23605489
attributes.tag: align_unique
attributes.value: 3354984
attributes.tag: align_multi
attributes.value: 1242523
attributes.tag: align_tooshort
attributes.value: 18962689
attributes.tag: duplication_rate
attributes.value: 0.729173385097379
attributes.tag: ftcount
attributes.value: 481470
attributes.tag: bias53
attributes.value: 1.28
attributes.tag: intron_exon_ratio
attributes.value: 0.191955024334716
attributes.tag: exon_ratio
attributes.value: 0.663417643873675
attributes.tag: exonic_reads
attributes.value: 645682.5
attributes.tag: intronic_reads
attributes.value: 123942
attributes.tag: intergenic_reads
attributes.value: 203642.5
attributes.tag: rrna_reads
attributes.value: 143852
attributes.tag: mtrna_reads
attributes.value: 262085
attributes.tag: nuclear_reads
attributes.value: 525887
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.154376792183932
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing