title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_628_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 31
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 52.5200004577637
attributes.tag: qxr_score
attributes.value: 0.0920000001788139
attributes.tag: lunit_score
attributes.value: 73.9000015258789
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 13708598
attributes.tag: reads_trimmed_filtered
attributes.value: 13700864
attributes.tag: align_input
attributes.value: 13674436
attributes.tag: align_unique
attributes.value: 3450306
attributes.tag: align_multi
attributes.value: 2044912
attributes.tag: align_tooshort
attributes.value: 8121974
attributes.tag: duplication_rate
attributes.value: 0.59351044007539
attributes.tag: ftcount
attributes.value: 628213
attributes.tag: bias53
attributes.value: 1.13
attributes.tag: intron_exon_ratio
attributes.value: 0.443806788947824
attributes.tag: exon_ratio
attributes.value: 0.485199000065613
attributes.tag: exonic_reads
attributes.value: 928052.5
attributes.tag: intronic_reads
attributes.value: 411876
attributes.tag: intergenic_reads
attributes.value: 572797
attributes.tag: rrna_reads
attributes.value: 263193
attributes.tag: mtrna_reads
attributes.value: 158728
attributes.tag: nuclear_reads
attributes.value: 1280852
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.15456728524589
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Low
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing