title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_601_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 27
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 48.939998626709
attributes.tag: qxr_score
attributes.value: 0.46399998664856
attributes.tag: lunit_score
attributes.value: 19.0200004577637
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 19096756
attributes.tag: reads_trimmed_filtered
attributes.value: 19080506
attributes.tag: align_input
attributes.value: 19022415
attributes.tag: align_unique
attributes.value: 2085896
attributes.tag: align_multi
attributes.value: 1034978
attributes.tag: align_tooshort
attributes.value: 15846643
attributes.tag: duplication_rate
attributes.value: 0.64780375212431
attributes.tag: ftcount
attributes.value: 205753
attributes.tag: bias53
attributes.value: 1.12
attributes.tag: intron_exon_ratio
attributes.value: 0.676131477506837
attributes.tag: exon_ratio
attributes.value: 0.398865611301512
attributes.tag: exonic_reads
attributes.value: 348272.5
attributes.tag: intronic_reads
attributes.value: 235478
attributes.tag: intergenic_reads
attributes.value: 289407
attributes.tag: rrna_reads
attributes.value: 102879
attributes.tag: mtrna_reads
attributes.value: 18231
attributes.tag: nuclear_reads
attributes.value: 647325
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.133881200101505
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing