title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_611_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 59
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 27.1200008392334
attributes.tag: qxr_score
attributes.value: 0.120999999344349
attributes.tag: lunit_score
attributes.value: 9.14999961853027
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 33034225
attributes.tag: reads_trimmed_filtered
attributes.value: 33020296
attributes.tag: align_input
attributes.value: 32977205
attributes.tag: align_unique
attributes.value: 5248328
attributes.tag: align_multi
attributes.value: 4043190
attributes.tag: align_tooshort
attributes.value: 23563437
attributes.tag: duplication_rate
attributes.value: 0.655118735863618
attributes.tag: ftcount
attributes.value: 963493
attributes.tag: bias53
attributes.value: 1.25
attributes.tag: intron_exon_ratio
attributes.value: 0.343357724197242
attributes.tag: exon_ratio
attributes.value: 0.497508051524498
attributes.tag: exonic_reads
attributes.value: 1324403
attributes.tag: intronic_reads
attributes.value: 454744
attributes.tag: intergenic_reads
attributes.value: 882926.5
attributes.tag: rrna_reads
attributes.value: 529009
attributes.tag: mtrna_reads
attributes.value: 440556
attributes.tag: nuclear_reads
attributes.value: 1361600
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.226929024758007
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Low
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing