title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_640_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 32
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 67.6100006103516
attributes.tag: qxr_score
attributes.value: 0.528999984264374
attributes.tag: lunit_score
attributes.value: 61.5200004577637
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/7/2023
attributes.tag: volume
attributes.value: 200
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 36495635
attributes.tag: reads_trimmed_filtered
attributes.value: 35233141
attributes.tag: align_input
attributes.value: 30225926
attributes.tag: align_unique
attributes.value: 6904845
attributes.tag: align_multi
attributes.value: 4527950
attributes.tag: align_tooshort
attributes.value: 18449621
attributes.tag: duplication_rate
attributes.value: 0.584398665229079
attributes.tag: ftcount
attributes.value: 1254093
attributes.tag: bias53
attributes.value: 1.2
attributes.tag: intron_exon_ratio
attributes.value: 0.429329972255447
attributes.tag: exon_ratio
attributes.value: 0.488965771109284
attributes.tag: exonic_reads
attributes.value: 1787918.5
attributes.tag: intronic_reads
attributes.value: 767607
attributes.tag: intergenic_reads
attributes.value: 1101005.5
attributes.tag: rrna_reads
attributes.value: 563267
attributes.tag: mtrna_reads
attributes.value: 581441
attributes.tag: nuclear_reads
attributes.value: 2177687
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.169536433807539
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing