title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_661_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 22
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 70.6600036621094
attributes.tag: qxr_score
attributes.value: 0.947000026702881
attributes.tag: lunit_score
attributes.value: 76.4400024414062
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/7/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 39448199
attributes.tag: reads_trimmed_filtered
attributes.value: 39409961
attributes.tag: align_input
attributes.value: 39275793
attributes.tag: align_unique
attributes.value: 12846610
attributes.tag: align_multi
attributes.value: 4339453
attributes.tag: align_tooshort
attributes.value: 21872474
attributes.tag: duplication_rate
attributes.value: 0.590828959074692
attributes.tag: ftcount
attributes.value: 3340055
attributes.tag: bias53
attributes.value: 1.21
attributes.tag: intron_exon_ratio
attributes.value: 0.193595689379071
attributes.tag: exon_ratio
attributes.value: 0.69959025268564
attributes.tag: exonic_reads
attributes.value: 4517957
attributes.tag: intronic_reads
attributes.value: 874657
attributes.tag: intergenic_reads
attributes.value: 1065390.5
attributes.tag: rrna_reads
attributes.value: 690403
attributes.tag: mtrna_reads
attributes.value: 1853861
attributes.tag: nuclear_reads
attributes.value: 3893615
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.107240754291903
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Low
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing