title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_618_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 23
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 55.8899993896484
attributes.tag: qxr_score
attributes.value: 0.441000014543533
attributes.tag: lunit_score
attributes.value: 35.5900001525879
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 15159103
attributes.tag: reads_trimmed_filtered
attributes.value: 15144341
attributes.tag: align_input
attributes.value: 15081849
attributes.tag: align_unique
attributes.value: 5414709
attributes.tag: align_multi
attributes.value: 4819298
attributes.tag: align_tooshort
attributes.value: 4554258
attributes.tag: duplication_rate
attributes.value: 0.420701362901478
attributes.tag: ftcount
attributes.value: 2286711
attributes.tag: bias53
attributes.value: 1.24
attributes.tag: intron_exon_ratio
attributes.value: 0.243480019105657
attributes.tag: exon_ratio
attributes.value: 0.590880147080357
attributes.tag: exonic_reads
attributes.value: 3419929.5
attributes.tag: intronic_reads
attributes.value: 832684.5
attributes.tag: intergenic_reads
attributes.value: 1535242.5
attributes.tag: rrna_reads
attributes.value: 863027
attributes.tag: mtrna_reads
attributes.value: 1421671
attributes.tag: nuclear_reads
attributes.value: 3020014
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.162690641829377
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing