title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL235_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 29
attributes.tag: site
attributes.value: Kisenyi
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 1/6/2022
attributes.tag: volume
attributes.value: 900
attributes.tag: library_prep_date
attributes.value: 1/12/2021
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 24441604
attributes.tag: reads_trimmed_filtered
attributes.value: 24379110
attributes.tag: align_input
attributes.value: 24227116
attributes.tag: align_unique
attributes.value: 6938234
attributes.tag: align_multi
attributes.value: 4814503
attributes.tag: align_tooshort
attributes.value: 12242614
attributes.tag: duplication_rate
attributes.value: 0.689734908430738
attributes.tag: ftcount
attributes.value: 912711
attributes.tag: bias53
attributes.value: 1.21
attributes.tag: intron_exon_ratio
attributes.value: 0.438705450781178
attributes.tag: exon_ratio
attributes.value: 0.47318433964956
attributes.tag: exonic_reads
attributes.value: 1381407.5
attributes.tag: intronic_reads
attributes.value: 606031
attributes.tag: intergenic_reads
attributes.value: 931947
attributes.tag: rrna_reads
attributes.value: 433933
attributes.tag: mtrna_reads
attributes.value: 73347
attributes.tag: nuclear_reads
attributes.value: 2031542
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.170919032527684
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_GHL_HIVPositive
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing