title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL136_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 25
attributes.tag: site
attributes.value: Kisenyi
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 1/4/2022
attributes.tag: volume
attributes.value: 1000
attributes.tag: library_prep_date
attributes.value: 1/5/2021
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 50685095
attributes.tag: reads_trimmed_filtered
attributes.value: 50514066
attributes.tag: align_input
attributes.value: 50032544
attributes.tag: align_unique
attributes.value: 1399264
attributes.tag: align_multi
attributes.value: 2596117
attributes.tag: align_tooshort
attributes.value: 45680084
attributes.tag: duplication_rate
attributes.value: 0.397998400916652
attributes.tag: ftcount
attributes.value: 145978
attributes.tag: bias53
attributes.value: 1.23
attributes.tag: intron_exon_ratio
attributes.value: 2.4982462143896
attributes.tag: exon_ratio
attributes.value: 0.147419490164113
attributes.tag: exonic_reads
attributes.value: 333136.5
attributes.tag: intronic_reads
attributes.value: 832257
attributes.tag: intergenic_reads
attributes.value: 1094392.5
attributes.tag: rrna_reads
attributes.value: 581913
attributes.tag: mtrna_reads
attributes.value: 2714
attributes.tag: nuclear_reads
attributes.value: 1526099
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.275693292260578
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_GHL_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing