title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL133_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 18
attributes.tag: site
attributes.value: Mulago
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 1/4/2022
attributes.tag: volume
attributes.value: 1000
attributes.tag: library_prep_date
attributes.value: 1/5/2021
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 27851960
attributes.tag: reads_trimmed_filtered
attributes.value: 27653648
attributes.tag: align_input
attributes.value: 27130324
attributes.tag: align_unique
attributes.value: 8958826
attributes.tag: align_multi
attributes.value: 6546698
attributes.tag: align_tooshort
attributes.value: 11205275
attributes.tag: duplication_rate
attributes.value: 0.588154018394612
attributes.tag: ftcount
attributes.value: 1866681
attributes.tag: bias53
attributes.value: 1.22
attributes.tag: intron_exon_ratio
attributes.value: 0.294487984829051
attributes.tag: exon_ratio
attributes.value: 0.55056129251933
attributes.tag: exonic_reads
attributes.value: 2877341.5
attributes.tag: intronic_reads
attributes.value: 847342.5
attributes.tag: intergenic_reads
attributes.value: 1501512.5
attributes.tag: rrna_reads
attributes.value: 659357
attributes.tag: mtrna_reads
attributes.value: 17098
attributes.tag: nuclear_reads
attributes.value: 3759719
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.148631906683552
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_GHL_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing