title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_648_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 30
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 62.6300010681152
attributes.tag: qxr_score
attributes.value: 0.474000006914139
attributes.tag: lunit_score
attributes.value: 19.6299991607666
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/7/2023
attributes.tag: volume
attributes.value: 200
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 61030419
attributes.tag: reads_trimmed_filtered
attributes.value: 60950452
attributes.tag: align_input
attributes.value: 60695301
attributes.tag: align_unique
attributes.value: 6020082
attributes.tag: align_multi
attributes.value: 2541727
attributes.tag: align_tooshort
attributes.value: 51966152
attributes.tag: duplication_rate
attributes.value: 0.691702608829953
attributes.tag: ftcount
attributes.value: 487862
attributes.tag: bias53
attributes.value: 1.22
attributes.tag: intron_exon_ratio
attributes.value: 0.748779592789868
attributes.tag: exon_ratio
attributes.value: 0.375904481270095
attributes.tag: exonic_reads
attributes.value: 764396.5
attributes.tag: intronic_reads
attributes.value: 572364.5
attributes.tag: intergenic_reads
attributes.value: 696725
attributes.tag: rrna_reads
attributes.value: 237832
attributes.tag: mtrna_reads
attributes.value: 172905
attributes.tag: nuclear_reads
attributes.value: 1413350
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.130384131897218
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing