title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_695_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: Negative
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 24
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 47.37
attributes.tag: qxr_score
attributes.value: 0.21
attributes.tag: lunit_score
attributes.value: 2.71
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/8/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 40525304
attributes.tag: reads_trimmed_filtered
attributes.value: 40472515
attributes.tag: align_input
attributes.value: 40278922
attributes.tag: align_unique
attributes.value: 10867097
attributes.tag: align_multi
attributes.value: 6584884
attributes.tag: align_tooshort
attributes.value: 22533602
attributes.tag: duplication_rate
attributes.value: 0.681715400281549
attributes.tag: ftcount
attributes.value: 1289787
attributes.tag: bias53
attributes.value: 1.3
attributes.tag: intron_exon_ratio
attributes.value: 0.477698802426401
attributes.tag: exon_ratio
attributes.value: 0.467519443048132
attributes.tag: exonic_reads
attributes.value: 1900593
attributes.tag: intronic_reads
attributes.value: 907911
attributes.tag: intergenic_reads
attributes.value: 1256766.5
attributes.tag: rrna_reads
attributes.value: 745793
attributes.tag: mtrna_reads
attributes.value: 316040
attributes.tag: nuclear_reads
attributes.value: 2501403
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.20930216241641
attributes.tag: tb
attributes.value: negative
attributes.tag: tb_binary
attributes.value: 0
attributes.tag: sample_group_granular
attributes.value: negative_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Negative
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing