title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_591_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 29
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 46.5299987792969
attributes.tag: qxr_score
attributes.value: 0.314999997615814
attributes.tag: lunit_score
attributes.value: 16.4200000762939
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 3/29/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 3/30/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 41029980
attributes.tag: reads_trimmed_filtered
attributes.value: 40831330
attributes.tag: align_input
attributes.value: 39967520
attributes.tag: align_unique
attributes.value: 3542640
attributes.tag: align_multi
attributes.value: 2946683
attributes.tag: align_tooshort
attributes.value: 33244549
attributes.tag: duplication_rate
attributes.value: 0.529907928754006
attributes.tag: ftcount
attributes.value: 360064
attributes.tag: bias53
attributes.value: 1.25
attributes.tag: intron_exon_ratio
attributes.value: 0.937172439031966
attributes.tag: exon_ratio
attributes.value: 0.290080680796122
attributes.tag: exonic_reads
attributes.value: 740511
attributes.tag: intronic_reads
attributes.value: 693986.5
attributes.tag: intergenic_reads
attributes.value: 1118278.5
attributes.tag: rrna_reads
attributes.value: 303012
attributes.tag: mtrna_reads
attributes.value: 113426
attributes.tag: nuclear_reads
attributes.value: 1608993
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.149603713974952
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing