title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_617_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 25
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 31.3799991607666
attributes.tag: qxr_score
attributes.value: 0.254999995231628
attributes.tag: lunit_score
attributes.value: 8.85000038146973
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 15547787
attributes.tag: reads_trimmed_filtered
attributes.value: 15534056
attributes.tag: align_input
attributes.value: 15484517
attributes.tag: align_unique
attributes.value: 6727397
attributes.tag: align_multi
attributes.value: 1532389
attributes.tag: align_tooshort
attributes.value: 7112946
attributes.tag: duplication_rate
attributes.value: 0.500027152206119
attributes.tag: ftcount
attributes.value: 860301
attributes.tag: bias53
attributes.value: 1.23
attributes.tag: intron_exon_ratio
attributes.value: 1.05491219597406
attributes.tag: exon_ratio
attributes.value: 0.334101810251693
attributes.tag: exonic_reads
attributes.value: 1265147
attributes.tag: intronic_reads
attributes.value: 1334619
attributes.tag: intergenic_reads
attributes.value: 1186945
attributes.tag: rrna_reads
attributes.value: 203616
attributes.tag: mtrna_reads
attributes.value: 284511
attributes.tag: nuclear_reads
attributes.value: 3010372
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.0582009598973731
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing