title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_603_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Negative
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 37
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 34.3300018310547
attributes.tag: qxr_score
attributes.value: 0.19200000166893
attributes.tag: lunit_score
attributes.value: 1.71000003814697
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 29819924
attributes.tag: reads_trimmed_filtered
attributes.value: 29775326
attributes.tag: align_input
attributes.value: 29621867
attributes.tag: align_unique
attributes.value: 2866797
attributes.tag: align_multi
attributes.value: 1712839
attributes.tag: align_tooshort
attributes.value: 24961590
attributes.tag: duplication_rate
attributes.value: 0.642042134293102
attributes.tag: ftcount
attributes.value: 342402
attributes.tag: bias53
attributes.value: 1.25
attributes.tag: intron_exon_ratio
attributes.value: 0.518482605081475
attributes.tag: exon_ratio
attributes.value: 0.450943792122979
attributes.tag: exonic_reads
attributes.value: 588864.5
attributes.tag: intronic_reads
attributes.value: 305316
attributes.tag: intergenic_reads
attributes.value: 411668.5
attributes.tag: rrna_reads
attributes.value: 162681
attributes.tag: mtrna_reads
attributes.value: 30966
attributes.tag: nuclear_reads
attributes.value: 961337
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.140851301836216
attributes.tag: tb
attributes.value: negative
attributes.tag: tb_binary
attributes.value: 0
attributes.tag: sample_group_granular
attributes.value: negative_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Negative
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing