title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_598_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 33
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 64.8199996948242
attributes.tag: qxr_score
attributes.value: 0.629000008106232
attributes.tag: lunit_score
attributes.value: 17.6299991607666
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 25714106
attributes.tag: reads_trimmed_filtered
attributes.value: 25665263
attributes.tag: align_input
attributes.value: 25470335
attributes.tag: align_unique
attributes.value: 2946926
attributes.tag: align_multi
attributes.value: 1014294
attributes.tag: align_tooshort
attributes.value: 21447670
attributes.tag: duplication_rate
attributes.value: 0.748514933579934
attributes.tag: ftcount
attributes.value: 203249
attributes.tag: bias53
attributes.value: 1.16
attributes.tag: intron_exon_ratio
attributes.value: 0.682213649147449
attributes.tag: exon_ratio
attributes.value: 0.411941765464709
attributes.tag: exonic_reads
attributes.value: 311829
attributes.tag: intronic_reads
attributes.value: 212734
attributes.tag: intergenic_reads
attributes.value: 232410.5
attributes.tag: rrna_reads
attributes.value: 70499
attributes.tag: mtrna_reads
attributes.value: 39678
attributes.tag: nuclear_reads
attributes.value: 577488
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.102519395345117
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing