title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_602_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 26
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 50.7200012207031
attributes.tag: qxr_score
attributes.value: 0.256000012159348
attributes.tag: lunit_score
attributes.value: 3.85999989509583
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 27260765
attributes.tag: reads_trimmed_filtered
attributes.value: 27222905
attributes.tag: align_input
attributes.value: 27082976
attributes.tag: align_unique
attributes.value: 5812884
attributes.tag: align_multi
attributes.value: 1177025
attributes.tag: align_tooshort
attributes.value: 19982070
attributes.tag: duplication_rate
attributes.value: 0.70237027572082
attributes.tag: ftcount
attributes.value: 310241
attributes.tag: bias53
attributes.value: 1.29
attributes.tag: intron_exon_ratio
attributes.value: 1.35825582127027
attributes.tag: exon_ratio
attributes.value: 0.279371791783045
attributes.tag: exonic_reads
attributes.value: 484709.5
attributes.tag: intronic_reads
attributes.value: 658359.5
attributes.tag: intergenic_reads
attributes.value: 591929
attributes.tag: rrna_reads
attributes.value: 108221
attributes.tag: mtrna_reads
attributes.value: 84299
attributes.tag: nuclear_reads
attributes.value: 1423334
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.0669744915072773
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: Low
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing