title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_696_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: Negative
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 32
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 53.22
attributes.tag: qxr_score
attributes.value: 0.32
attributes.tag: lunit_score
attributes.value: 5.91
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/8/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 28456708
attributes.tag: reads_trimmed_filtered
attributes.value: 28437896
attributes.tag: align_input
attributes.value: 28374975
attributes.tag: align_unique
attributes.value: 14480728
attributes.tag: align_multi
attributes.value: 5282949
attributes.tag: align_tooshort
attributes.value: 8452854
attributes.tag: duplication_rate
attributes.value: 0.694896439106784
attributes.tag: ftcount
attributes.value: 2356732
attributes.tag: bias53
attributes.value: 1.22
attributes.tag: intron_exon_ratio
attributes.value: 0.166193422430179
attributes.tag: exon_ratio
attributes.value: 0.712676582772337
attributes.tag: exonic_reads
attributes.value: 3285301.5
attributes.tag: intronic_reads
attributes.value: 545995.5
attributes.tag: intergenic_reads
attributes.value: 778510
attributes.tag: rrna_reads
attributes.value: 511944
attributes.tag: mtrna_reads
attributes.value: 597986
attributes.tag: nuclear_reads
attributes.value: 3142607
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.120385548673651
attributes.tag: tb
attributes.value: negative
attributes.tag: tb_binary
attributes.value: 0
attributes.tag: sample_group_granular
attributes.value: negative_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Negative
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing