title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_569_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 34
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 83.370002746582
attributes.tag: qxr_score
attributes.value: 0.358000010251999
attributes.tag: lunit_score
attributes.value: 53.7799987792969
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/3/2023
attributes.tag: volume
attributes.value: 300
attributes.tag: library_prep_date
attributes.value: 4/4/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 15379019
attributes.tag: reads_trimmed_filtered
attributes.value: 15354907
attributes.tag: align_input
attributes.value: 15264700
attributes.tag: align_unique
attributes.value: 1307202
attributes.tag: align_multi
attributes.value: 1171215
attributes.tag: align_tooshort
attributes.value: 12724256
attributes.tag: duplication_rate
attributes.value: 0.400268805911032
attributes.tag: ftcount
attributes.value: 436216
attributes.tag: bias53
attributes.value: 1.3
attributes.tag: intron_exon_ratio
attributes.value: 0.315353940231332
attributes.tag: exon_ratio
attributes.value: 0.537794247911314
attributes.tag: exonic_reads
attributes.value: 730985
attributes.tag: intronic_reads
attributes.value: 230519
attributes.tag: intergenic_reads
attributes.value: 397724
attributes.tag: rrna_reads
attributes.value: 185268
attributes.tag: mtrna_reads
attributes.value: 171275
attributes.tag: nuclear_reads
attributes.value: 830413
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.156086662016115
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing