title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_693_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 19
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 66.76
attributes.tag: qxr_score
attributes.value: 0.36
attributes.tag: lunit_score
attributes.value: 11.93
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/7/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 4/10/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 43184393
attributes.tag: reads_trimmed_filtered
attributes.value: 43118742
attributes.tag: align_input
attributes.value: 42888596
attributes.tag: align_unique
attributes.value: 22073997
attributes.tag: align_multi
attributes.value: 7394590
attributes.tag: align_tooshort
attributes.value: 13121693
attributes.tag: duplication_rate
attributes.value: 0.574026386931738
attributes.tag: ftcount
attributes.value: 6594228
attributes.tag: bias53
attributes.value: 1.17
attributes.tag: intron_exon_ratio
attributes.value: 0.10086723157944
attributes.tag: exon_ratio
attributes.value: 0.790383320463486
attributes.tag: exonic_reads
attributes.value: 8860955
attributes.tag: intronic_reads
attributes.value: 893780
attributes.tag: intergenic_reads
attributes.value: 1456224
attributes.tag: rrna_reads
attributes.value: 1233263
attributes.tag: mtrna_reads
attributes.value: 3685917
attributes.tag: nuclear_reads
attributes.value: 6186345
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.111049500136193
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing