title: Plasma cell-free RNA, RNA seq gene counts for patient: GHL65_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 20
attributes.tag: site
attributes.value: Mulago
attributes.tag: cad4tb_score
attributes.value: NA
attributes.tag: qxr_score
attributes.value: NA
attributes.tag: lunit_score
attributes.value: NA
attributes.tag: cohort
attributes.value: GHL
attributes.tag: extract_date
attributes.value: 11/15/2021
attributes.tag: volume
attributes.value: 1000
attributes.tag: library_prep_date
attributes.value: 11/16/2021
attributes.tag: bfcohort
attributes.value: ghl
attributes.tag: reads_all
attributes.value: 37654384
attributes.tag: reads_trimmed_filtered
attributes.value: 37631945
attributes.tag: align_input
attributes.value: 37569726
attributes.tag: align_unique
attributes.value: 4113655
attributes.tag: align_multi
attributes.value: 2487304
attributes.tag: align_tooshort
attributes.value: 30819570
attributes.tag: duplication_rate
attributes.value: 0.595183894626411
attributes.tag: ftcount
attributes.value: 501870
attributes.tag: bias53
attributes.value: 1.29
attributes.tag: intron_exon_ratio
attributes.value: 0.752861747580157
attributes.tag: exon_ratio
attributes.value: 0.379963576587823
attributes.tag: exonic_reads
attributes.value: 846336
attributes.tag: intronic_reads
attributes.value: 637174
attributes.tag: intergenic_reads
attributes.value: 743903.5
attributes.tag: rrna_reads
attributes.value: 282011
attributes.tag: mtrna_reads
attributes.value: 15769
attributes.tag: nuclear_reads
attributes.value: 1677728
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.14275366133673
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_GHL_HIVNegative
attributes.tag: semiquant
attributes.value: Medium
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing