title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_584_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Positive
attributes.tag: Sex
attributes.value: male
attributes.tag: age
attributes.value: 28
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 77.2900009155273
attributes.tag: qxr_score
attributes.value: 0.917999982833862
attributes.tag: lunit_score
attributes.value: 70.6600036621094
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 3/29/2023
attributes.tag: volume
attributes.value: 500
attributes.tag: library_prep_date
attributes.value: 3/30/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 23170727
attributes.tag: reads_trimmed_filtered
attributes.value: 23086266
attributes.tag: align_input
attributes.value: 22701215
attributes.tag: align_unique
attributes.value: 2632297
attributes.tag: align_multi
attributes.value: 824751
attributes.tag: align_tooshort
attributes.value: 19146253
attributes.tag: duplication_rate
attributes.value: 0.655118556402003
attributes.tag: ftcount
attributes.value: 142072
attributes.tag: bias53
attributes.value: 1.28
attributes.tag: intron_exon_ratio
attributes.value: 1.79485069704524
attributes.tag: exon_ratio
attributes.value: 0.221070244032643
attributes.tag: exonic_reads
attributes.value: 223622.5
attributes.tag: intronic_reads
attributes.value: 401369
attributes.tag: intergenic_reads
attributes.value: 386553.5
attributes.tag: rrna_reads
attributes.value: 72041
attributes.tag: mtrna_reads
attributes.value: 31908
attributes.tag: nuclear_reads
attributes.value: 842595
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.0761095099646715
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVPositive
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing