title: Plasma cell-free RNA, RNA seq gene counts for patient: TBSQUARE_573_combined_61bp
organism: Homo sapiens
attributes.tag: source_name
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: tissue
attributes.value: Plasma, extracted cell-free RNA
attributes.tag: micro_ref_stndrd
attributes.value: TB Positive
attributes.tag: hiv
attributes.value: Negative
attributes.tag: Sex
attributes.value: female
attributes.tag: age
attributes.value: 18
attributes.tag: site
attributes.value: Uganda
attributes.tag: cad4tb_score
attributes.value: 77.870002746582
attributes.tag: qxr_score
attributes.value: 0.833000004291534
attributes.tag: lunit_score
attributes.value: 26.1299991607666
attributes.tag: cohort
attributes.value: TBSQUARE
attributes.tag: extract_date
attributes.value: 4/5/2023
attributes.tag: volume
attributes.value: 150
attributes.tag: library_prep_date
attributes.value: 4/6/2023
attributes.tag: bfcohort
attributes.value: tbs
attributes.tag: reads_all
attributes.value: 11701069
attributes.tag: reads_trimmed_filtered
attributes.value: 11680694
attributes.tag: align_input
attributes.value: 11593886
attributes.tag: align_unique
attributes.value: 2307537
attributes.tag: align_multi
attributes.value: 1015793
attributes.tag: align_tooshort
attributes.value: 8212321
attributes.tag: duplication_rate
attributes.value: 0.55264001058799
attributes.tag: ftcount
attributes.value: 412194
attributes.tag: bias53
attributes.value: 1.31
attributes.tag: intron_exon_ratio
attributes.value: 0.475729854109075
attributes.tag: exon_ratio
attributes.value: 0.485055220848515
attributes.tag: exonic_reads
attributes.value: 625810
attributes.tag: intronic_reads
attributes.value: 297716.5
attributes.tag: intergenic_reads
attributes.value: 366656.5
attributes.tag: rrna_reads
attributes.value: 160024
attributes.tag: mtrna_reads
attributes.value: 253556
attributes.tag: nuclear_reads
attributes.value: 776741
attributes.tag: passqc
attributes.value: TRUE
attributes.tag: rrna_fraction
attributes.value: 0.134437685296655
attributes.tag: tb
attributes.value: positive
attributes.tag: tb_binary
attributes.value: 1
attributes.tag: sample_group_granular
attributes.value: positive_TBSQUARE_HIVNegative
attributes.tag: semiquant
attributes.value: High
attributes.tag: geo_loc_name
attributes.value: missing
attributes.tag: collection_date
attributes.value: missing