title: Metagenome-assembled genome: SRR3724644_metabat2_57
organism: Candidatus Iainarchaeum sp.
description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724644 of study SRP043213.
attributes.tag: assembly software
attributes.value: metaspades_v3.14.1
attributes.tag: binning software
attributes.value: MGnify-genomes-generation-pipeline_v1.0.0
attributes.tag: organism
attributes.value: Candidatus Diapherotrites archaeon
attributes.tag: broad-scale environmental context
attributes.value: water
attributes.tag: assembly quality
attributes.value: Many fragments with little to no review of assembly other than reporting of standard assembly statistics
attributes.tag: collection date
attributes.value: 2010-08-11
attributes.tag: sample derived from
attributes.value: SAMN05224398
attributes.tag: geographic location (longitude)
attributes.value: -123.50000000
attributes.tag: taxonomic identity marker
attributes.value: multi-marker approach
attributes.tag: binning parameters
attributes.value: default
attributes.tag: completeness score
attributes.value: 83.55
attributes.tag: contamination score
attributes.value: 0.56
attributes.tag: environmental medium
attributes.value: fjord
attributes.tag: geographic location (latitude)
attributes.value: 48.60000000
attributes.tag: scientific_name
attributes.value: Candidatus Diapherotrites archaeon
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: local environmental context
attributes.value: marine
attributes.tag: metagenomic source
attributes.value: marine metagenome
attributes.tag: project name
attributes.value: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.
attributes.tag: sequencing method
attributes.value: Illumina HiSeq 2000
attributes.tag: completeness software
attributes.value: CheckM2_v1.0.1
attributes.tag: geographic location (country and/or sea)
attributes.value: not provided
attributes.tag: isolation_source
attributes.value: marine metagenome