title: EMOBON_ROSKOGO_So_21
organism: marine sediment metagenome
description: EMOBON metagenome sediment sample from station ROSKOGO collected on 2022-12-22 community collected micro
attributes.tag: ENA first public
attributes.value: 2025-04-24
attributes.tag: INSDC center name
attributes.value: European Marine Biological Resource Centre
attributes.tag: INSDC status
attributes.value: public
attributes.tag: Submitter Id
attributes.value: EMOBON00194
attributes.tag: broad-scale environmental context
attributes.value: marine biome [ENVO:00000447];marine benthic biome[ENVO_01000024]
attributes.tag: collection date
attributes.value: 2022-12-22
attributes.tag: depth
attributes.value: 17
attributes.tag: dna concentration
attributes.value: 13.8
attributes.tag: elevation
attributes.value: -17
attributes.tag: environmental medium
attributes.value: sediment [ENVO:00002007]
attributes.tag: geographic location (country and/or sea)
attributes.value: France
attributes.tag: geographic location (latitude)
attributes.value: 48.708333
attributes.tag: geographic location (locality)
attributes.value: French part of the English Channel
attributes.tag: geographic location (longitude)
attributes.value: -3.866
attributes.tag: geographic location (ocean)
attributes.value: North Atlantic Ocean
attributes.tag: geographic location (region and locality)
attributes.value: English Channel
attributes.tag: library reads sequenced
attributes.value: 98214549
attributes.tag: local environmental context
attributes.value: shallow_marine_sediment_[ENVO:03000034]
attributes.tag: mock_pr
attributes.value: DDC_AAAAOSDA_1_HCFCYDSX5.UDI137
attributes.tag: nucleic acid amplification
attributes.value: metag
attributes.tag: nucleic acid extraction
attributes.value: https://www.qiagen.com/us/products/discovery-and-translational-research/dna-rna-purification/dna-purification/microbial-dna/dneasy-powersoil-pro-kit?catno=47016
attributes.tag: obs_id
attributes.value: ROSKOGO
attributes.tag: pcr conditions
attributes.value: DNA Polymerase:taq Q5;NoPCRs:2;PCRvolume:30;Nocycles:12
attributes.tag: pcr primers
attributes.value: metag
attributes.tag: project name
attributes.value: EMOBON
attributes.tag: relevant standard operating procedures
attributes.value: Prod_ILL_BqADN_LowCost_148_v5; Bq low cost
attributes.tag: sample collection device
attributes.value: core
attributes.tag: sample material processing
attributes.value: SoSOP2
attributes.tag: sample name
attributes.value: EMOBON00194
attributes.tag: sample storage location
attributes.value: SBR YD001 freezer 17
attributes.tag: sample storage temperature
attributes.value: -80
attributes.tag: scientific_name
attributes.value: marine sediment metagenome
attributes.tag: sea surface temperature
attributes.value: 12
attributes.tag: sea surface temperature method
attributes.value: deduced from temperature measured at Estacade on 1/9/2021
attributes.tag: sequence quality check
attributes.value: manual
attributes.tag: sequence_batch
attributes.value: Batch2
attributes.tag: sequence_batch_rundate
attributes.value: Batch2_230126
attributes.tag: sequencing method
attributes.value: Illumina NovaSeq 6000
attributes.tag: source material identifiers
attributes.value: EMOBON_ROSKOGO_So_211222_micro_1
attributes.tag: status
attributes.value: sample
attributes.tag: target gene
attributes.value: metag
attributes.tag: target subfragment
attributes.value: metag
attributes.tag: total depth of water column
attributes.value: 18