title: c1678e03-4697-4937-a94a-bdd172b0c01e-asg-bin.45
organism: Polynucleobacter necessarius
attributes.tag: 16S recovery software
attributes.value: PROKKA (version 1.14.6)
attributes.tag: 16s recovered
attributes.value: Yes
attributes.tag: ENA first public
attributes.value: 2025-03-03
attributes.tag: GAL
attributes.value: University of British Columbia
attributes.tag: GAL_sample_id
attributes.value: NOT PROVIDED
attributes.tag: INSDC center name
attributes.value: Tree of Life Programme
attributes.tag: INSDC status
attributes.value: public
attributes.tag: MAG coverage software
attributes.value: Minimap2 (version 2.24-r1122)
attributes.tag: Submitter Id
attributes.value: c1678e03-4697-4937-a94a-bdd172b0c01e
attributes.tag: assembly quality
attributes.value: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
attributes.tag: assembly software
attributes.value: metaMDBG (version 0.3)
attributes.tag: barcoding center
attributes.value: UNIVERSITY OF BRITISH COLUMBIA
attributes.tag: binning parameters
attributes.value: coverage; graph
attributes.tag: binning software
attributes.value: MetaBat (version 2.15); DASTOOL (version 1.1.5)
attributes.tag: broad-scale environmental context
attributes.value: aquatic biome
attributes.tag: collected_by
attributes.value: CLAUDIA VANNINI
attributes.tag: collecting institution
attributes.value: University of Pisa
attributes.tag: collection date
attributes.value: 2023-08-10
attributes.tag: completeness score
attributes.value: 97.59
attributes.tag: completeness software
attributes.value: checkM (version 1.2.2); checkM_DB (release 2015-01-16)
attributes.tag: contamination score
attributes.value: 0.31
attributes.tag: culture_or_strain_id
attributes.value: Eoc2
attributes.tag: environmental medium
attributes.value: ciliate culture
attributes.tag: geographic location (country and/or sea)
attributes.value: Italy
attributes.tag: geographic location (latitude)
attributes.value: 43.72
attributes.tag: geographic location (longitude)
attributes.value: 10.40
attributes.tag: geographic location (region and locality)
attributes.value: Pisa
attributes.tag: habitat
attributes.value: Laboratory culture
attributes.tag: host life stage
attributes.value: vegetative cell
attributes.tag: host scientific name
attributes.value: Euplotes octocarinatus
attributes.tag: host sex
attributes.value: not applicable
attributes.tag: host taxid
attributes.value: 2716877
attributes.tag: identified_by
attributes.value: VITTORIO BOSCARO
attributes.tag: identifier_affiliation
attributes.value: University of British Columbia
attributes.tag: investigation type
attributes.value: metagenome-assembled genome
attributes.tag: isolation_source
attributes.value: Ciliate: Euplotes octocarinatus
attributes.tag: local environmental context
attributes.value: freshwater biome
attributes.tag: metagenomic source
attributes.value: ciliate metagenome
attributes.tag: number of standard tRNAs extracted
attributes.value: 37
attributes.tag: organism part
attributes.value: WHOLE ORGANISM
attributes.tag: project name
attributes.value: ASG
attributes.tag: sample collection method
attributes.value: Harvested by centrifugation
attributes.tag: sample derived from
attributes.value: SAMEA117789328
attributes.tag: sample name
attributes.value: c1678e03-4697-4937-a94a-bdd172b0c01e
attributes.tag: scientific_name
attributes.value: Polynucleobacter necessarius
attributes.tag: sequencing method
attributes.value: Pacbio Sequel II
attributes.tag: specimen_id
attributes.value: UOBC0000073
attributes.tag: specimen_voucher
attributes.value: NOT PROVIDED
attributes.tag: tRNA extraction software
attributes.value: PROKKA (version 1.14.6)
attributes.tag: taxonomic classification
attributes.value: GTDB-TK (version 2.4.0); GTDB (release 214)
attributes.tag: taxonomic identity marker
attributes.value: ani_screen
attributes.tag: tolid
attributes.value: piEupOcto1.Polynucleobacter_necessarius_2